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...ataggatctccaatactgtctgtcagttttgtataccgcgaaacattttctaatgtttatattaccatctgtgacatttctgcgctgttgtgatggccagATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAAAAGGACGATAACATGGCTGGTGAATGGAACCACACCTCGGGGAAATGGAATGGAGATGCAGA
species | Zea mays |
transcript | GRMZM2G074687_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTCTGTCGCCGCCGTCGCCGGCGAGGTATTCTTCCAGGAGAAGTTCGAAG ATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAAAAGGACGATAACAEST: gi|148963585|gb|EE014618.2|EE014618
genomic: CTCTGTCGCCGCCGTCGCCGGCGAGGTATTCTTCCAGGAGAAGTTCGAAGgtgattccct ... tgatggccagATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAAAAGGACGATAACA
EST: CTCTGTCGCCGCCGTCGCCGGCGAGGTATTCTTCCAGGAGAAGTTCGAAG ATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAAAAGGACGATAACAEST: gi|148948737|gb|EC898659.2|EC898659
genomic: CTCTGTCGCCGCCGTCGCCGGCGAGGTATTCTTCCAGGAGAAGTTCGAAGgtgattccct ... tgatggccagATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAAAAGGACGATAACA
EST: CTCTGTCGCCGCCGTCGCCGGCGAGGTATTCTTCCAGGAGAAGTTCGAAG ATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAAAAGGACGATAACAEST: gi|149008411|gb|EE040568.2|EE040568
genomic: CTCTGTCGCCGCCGTCGCCGGCGAGGTATTCTTCCAGGAGAAGTTCGAAGgtgattccct ... tgatggccagATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAAAAGGACGATAACA
EST: CTCTGTCGCCGCCGTCGCCGGCGAGGTATTCTTCCAGGAGAAGTTCGAAG ATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAAAAGGACGATAACAEST: gi|149014111|gb|EE043648.2|EE043648
genomic: CTCTGTCGCCGCCGTCGCCGGCGAGGTATTCTTCCAGGAGAAGTTCGAAGgtgattccct ... tgatggccagATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAAAAGGACGATAACA
EST: CTCTGTCGCCGCCGTCGCCGGCGAGGTATTCTTCCAGGAGAAGTTCGAAG ATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAAAAGGACGATAACAEST: gi|31558809|gb|CD528021.1|CD528021
genomic: CTCTGTCGCCGCCGTCGCCGGCGAGGTATTCTTCCAGGAGAAGTTCGAAGgtgattccct ... tgatggccagATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAAAAGGACGATAACA
EST: CTCTGTCGCCGCCGTCGCCGGCGAGGTATTCTTCCAGGAGAAGTTCGAAG ATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAAAAGGACGATAACAEST: gi|148935865|gb|EC879913.2|EC879913
genomic: CTCTGTCGCCGCCGTCGCCGGCGAGGTATTCTTCCAGGAGAAGTTCGAAGgtgattccct ... tgatggccagATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAAAAGGACGATAACA
EST: CTCTGTCGCCGCCGTCGCCGGCGAGGTATTCTTCCAGGAGAAGTTCGAAG ATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAAAAGGACGATAACAEST: gi|149097674|gb|EE183578.2|EE183578
genomic: CTCTGTCGCCGCCGTCGCCGGCGAGGTATTCTTCCAGGAGAAGTTCGAAGgtgattccct ... tgatggccagATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAAAAGGACGATAACA
EST: CTCTGTCGCCGCCGTCGCCGGCGAGGTATTCTTCCAGGAGAAGTTCGAAG ATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAAAAGGACGATAACAEST: gi|148959988|gb|EE153227.2|EE153227
genomic: CTCTGTCGCCGCCGTCGCCGGCGAGGTATTCTTCCAGGAGAAGTTCGAAGgtgattccct ... tgatggccagATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAAAAGGACGATAACA
EST: CTCTGTCGCCGCCGTCGCCGGCGAGGTATTCTTCCAGGAGAAGTTCGAAG ATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAAAAGGACGATAACAEST: gi|149112807|gb|EE295617.2|EE295617
genomic: CTCTGTCGCCGCCGTCGCCGGCGAGGTATTCTTCCAGGAGAAGTTCGAAGgtgattccct ... tgatggccagATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAAAAGGACGATAACA
EST: CTCTGTCGCCGCCGTCGCCGGCGAGGTATTCTTCCAGGAGAAGTTCGAAG ATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAAAAGGACGATAACAEST: gi|149011835|gb|EE042440.2|EE042440
genomic: CTCTGTCGCCGCCGTCGCCGGCGAGGTATTCTTCCAGGAGAAGTTCGAAGgtgattccct ... tgatggccagATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAAAAGGACGATAACA
EST: CTCTGTCGCCGCCGTCGCCGGCGAGGTATTCTTCCAGGAGAAGTTCGAAG ATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAAAAGGACGATAACAEST: gi|148996195|gb|EE035467.2|EE035467
genomic: CTCTGTCGCCGCCGTCGCCGGCGAGGTATTCTTCCAGGAGAAGTTCGAAGgtgattccct ... tgatggccagATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAAAAGGACGATAACA
EST: CTCTGTCGCCGCCGTCGCCGGCGAGGTATTCTTCCAGGAGAAGTTCGAAG ATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAAAAGGACGATAACAEST: gi|149084306|gb|EE173743.2|EE173743
genomic: CTCTGTCGCCGCCGTCGCCGGCGAGGTATTCTTCCAGGAGAAGTTCGAAGgtgattccct ... tgatggccagATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAAAAGGACGATAACA
EST: CTCTGTCGCCGCCGTCGCCGGCGAGGTATTCTTCCAGGAGAAGTTCGAAG ATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAAAAGGACGATAACAEST: gi|148935504|gb|EC879545.2|EC879545
genomic: CTCTGTCGCCGCCGTCGCCGGCGAGGTATTCTTCCAGGAGAAGTTCGAAGgtgattccct ... tgatggccagATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAAAAGGACGATAACA
EST: CTCTGTCGCCGCCGTCGCCGGCGAGGTATTCTTCCAGGAGAAGTTCGAAG ATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAAAAGGACGATAACA
genomic: CTCTGTCGCCGCCGTCGCCGGCGAGGTATTCTTCCAGGAGAAGTTCGAAGgtgattccct ... tgatggccagATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAAAAGGACGATAACA
ttttctaatgtttatattaccatctgtgacatttctgcgctgttgtgatggccagATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAAAAGGACGATAACATGGCTGGTGAATGGAACCACACCTCGGGGAAATGGAATGGAGATGCAGA
ttctaat putative branch site (score: 1044)
taatgtttatatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ataggatctccaatactgtctgtcagttttgtataccgcgaaacattttctaatgtttatattaccatctgtgacatttctgcgctgttgtgatggccagATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAAAAGGACGATAACATGGCTGGTGAATGGAACCACACCTCGGGGAAATGGAATGGAGATGCAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - -ctgtctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccatctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgacatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctgttg