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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagcctccctgcggccttcccacctcgcctgctggccgtatcctatgtgttctctaacgagggtctgtttggtcctgcagGACCTGCGTGGCCATCGCCGGCGCCGATTACTGTGTCGTCGCGGCGGACACCCGCCTCTCTGTCGGATACAGCATCCTCACGCGCGACCACTCTAAGATC

Basic information

species Zea mays
transcript GRMZM2G074386_T07
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G074386_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os09g32800.2 (Oryza sativa), 3'ss of exon 1
----------------gtagcctccctgcggcc-----ttcccacctcgcctgctggccgtatcctatgtgttctctaacgagggtctgtttggtcctgcagGACCTGCGTGGCCATCGCCGGCGCCGATTACTGTGTCGTCGCGGCGGACACCCGCCTCTCTGTCGGATACAGCATCCTCACGCGCGACCACTCTAAGATC
                |   ||  || || |||     ||||  |  | |  |||| |     ||   | ||| |     |  ||| ||| ||  |||||||||| |||||||||||||||||||| || ||||| || || || || || |||||||| || |||||||||| ||||||||||||||||||||| ||||||
gtaagcccccatactcgatccccgcccgccgccgtggtttcctccggctctcgctgacgacggcc-gcgggttgtt----gttggtgtgtgtgtgcctgcagGACGTGCGTGGCCATCGCCGGCGCGGACTACTGCGTGGTGGCCGCCGATACCCGCCTTTCCGTCGGATACAACATCCTCACGCGCGACCACTCCAAGATC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211144973|gb|FL424892.1|FL424892
EST:     ACCACTGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGG                         GACCTGCGTGGCCATCGCCGGCGCCGATTACTGTGTCGTCGCGGCGGACAC
genomic: ACCACTGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGGgtagcctccc ... ggtcctgcagGACCTGCGTGGCCATCGCCGGCGCCGATTACTGTGTCGTCGCGGCGGACAC
EST: gi|76013537|gb|DT940707.1|DT940707
EST:     ACCACTGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGG                         GACCTGCGTGGCCATCGCCGGCGCCGATTACTGTGTCGTCGCGGCGGACAC
genomic: ACCACTGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGGgtagcctccc ... ggtcctgcagGACCTGCGTGGCCATCGCCGGCGCCGATTACTGTGTCGTCGCGGCGGACAC
EST: gi|211151429|gb|FL260596.1|FL260596
EST:     ACCACTGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGG                         GACCTGCGTGGCCATCGCCGGCGCCGATTACTGTGKYGTCGCGGCGGACAC
genomic: ACCACTGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGGgtagcctccc ... ggtcctgcagGACCTGCGTGGCCATCGCCGGCGCCGATTACTGTGTCGTCGCGGCGGACAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgcctgctggccgtatcctatgtgttctctaacgagggtctgtttggtcctgcagGACCTGCGTGGCCATCGCCGGCGCCGATTACTGTGTCGTCGCGGCGGACACCCGCCTCTCTGTCGGATACAGCATCCTCACGCGCGACCACTCTAAGATC
                          ctctaac  putative branch site (score: 2)