1 5' 3' | 2 5' 3' | 3 5' 3' |
...attcaaaaatacattctgcatgcttcacttgtacttataagtgtaatatagctgtctacttacactccctcatttgatcattttcgcaataatttaacagGGCATATTGATCATTCTGCAAGGGTCATGAAAATAATTACATGGAATAGATCCTTTAAAGGAATGCAAAATGGCGATGATGGGAAAGATGACTTCGAAAA
species | Zea mays |
transcript | GRMZM2G074377_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCTGGAGGCCAACAGGATGCATTACCACTCCAATTTCGCCGACAACCGAG GGCATATTGATCATTCTGCAAGGGTCATGAAAATAATTACATGGAATAGATEST: gi|26558751|gb|CA830986.1|CA830986
genomic: GCTGGAGGCCAACAGGATGCATTACCACTCCAATTTCGCCGACAACCGAGgtcagtgact ... aatttaacagGGCATATTGATCATTCTGCAAGGGTCATGAAAATAATTACATGGAATAGAT
EST: GCTGGAGGCCAACAGGATGCATTACCACTCCAATTTCGCCGACAACCGAG GGCATATTGATCATTCTGCAAGGGTCATGAAAATAATTACATGGAATAGATEST: gi|22472822|gb|BU037302.1|BU037302
genomic: GCTGGAGGCCAACAGGATGCATTACCACTCCAATTTCGCCGACAACCGAGgtcagtgact ... aatttaacagGGCATATTGATCATTCTGCAAGGGTCATGAAAATAATTACATGGAATAGAT
EST: GCTGGAGGCCAACAGGATGCATTACCACTCCAATTTCGCCGACAACCGAG GGCATATTGATCATTCTGCAAGGGTCATGAAAATAATTACATGGAATAGATEST: gi|26559499|gb|CA831734.1|CA831734
genomic: GCTGGAGGCCAACAGGATGCATTACCACTCCAATTTCGCCGACAACCGAGgtcagtgact ... aatttaacagGGCATATTGATCATTCTGCAAGGGTCATGAAAATAATTACATGGAATAGAT
EST: GCTGGAGGCCAACAGGATGCATTACCACTCCAATTTCGCCGACAACCGAG GGCATATTGATCATTCTGCAAGGGTCATGAAAATAATTACATGGAATAGATEST: gi|87157449|gb|DY402238.1|DY402238
genomic: GCTGGAGGCCAACAGGATGCATTACCACTCCAATTTCGCCGACAACCGAGgtcagtgact ... aatttaacagGGCATATTGATCATTCTGCAAGGGTCATGAAAATAATTACATGGAATAGAT
EST: GCTGGAGGCCAACAGGATGCATTACCACTCCAATTTCGCCGACAACCGAG GGCATATTGATCATTCTGCAAGGGTCATGAAAATAATTACATGGAATAGATEST: gi|91868948|gb|EB400219.1|EB400219
genomic: GCTGGAGGCCAACAGGATGCATTACCACTCCAATTTCGCCGACAACCGAGgtcagtgact ... aatttaacagGGCATATTGATCATTCTGCAAGGGTCATGAAAATAATTACATGGAATAGAT
EST: GCTGGAGGCCAACAGGATGCATTACCACTCCAATTTCGCCGACAACCGAG GGCATATTGATCATTCTGCAAGGGTCATGAAAATAATTACATGGAATAGATEST: gi|21809787|gb|BQ668105.1|BQ668105
genomic: GCTGGAGGCCAACAGGATGCATTACCACTCCAATTTCGCCGACAACCGAGgtcagtgact ... aatttaacagGGCATATTGATCATTCTGCAAGGGTCATGAAAATAATTACATGGAATAGAT
EST: GCTGGAGGCCAACAGGATGCATTACCACTCCAATTTCGCCGACAACCGAG GGCATATTGATCATTCTGCAAGGGTCATGAAAATAATTACATGGAATAGATEST: gi|60401243|gb|DN234050.1|DN234050
genomic: GCTGGAGGCCAACAGGATGCATTACCACTCCAATTTCGCCGACAACCGAGgtcagtgact ... aatttaacagGGCATATTGATCATTCTGCAAGGGTCATGAAAATAATTACATGGAATAGAT
EST: GCTGGAGGCCAACAGGATGCATTACCACTCCAATTTCGCCGACAACCGAG GGCATATTGATCATTCTGCAAGGGTCATGAAAATAATTACATGGAATAGATEST: gi|22546022|gb|BU098356.1|BU098356
genomic: GCTGGAGGCCAACAGGATGCATTACCACTCCAATTTCGCCGACAACCGAGgtcagtgact ... aatttaacagGGCATATTGATCATTCTGCAAGGGTCATGAAAATAATTACATGGAATAGAT
EST: GCTGGAGGCCAACAGGATGCATTACCACTCCAATTTCGCCGACAACCGAG GGCATATTGATCATTCTGCAAGGGTCATGAAAATAATTACATGGAATAGATEST: gi|22715404|gb|BU197744.1|BU197744
genomic: GCTGGAGGCCAACAGGATGCATTACCACTCCAATTTCGCCGACAACCGAGgtcagtgact ... aatttaacagGGCATATTGATCATTCTGCAAGGGTCATGAAAATAATTACATGGAATAGAT
EST: GCTGGAGGCCAACAGGATGCATTACCACTCCAATTTCGCCGACAACCGAG GGCATATTGATCATTCTGCAAGGGTCATGAAAATAATTACATGGAATAGAT
genomic: GCTGGAGGCCAACAGGATGCATTACCACTCCAATTTCGCCGACAACCGAGgtcagtgact ... aatttaacagGGCATATTGATCATTCTGCAAGGGTCATGAAAATAATTACATGGAATAGAT
atatagctgtctacttacactccctcatttgatcattttcgcaataatttaacagGGCATATTGATCATTCTGCAAGGGTCATGAAAATAATTACATGGAATAGATCCTTTAAAGGAATGCAAAATGGCGATGATGGGAAAGATGACTTCGAAAA
aataatttaaca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attcaaaaatacattctgcatgcttcacttgtacttataagtgtaatatagctgtctacttacactccctcatttgatcattttcgcaataatttaacagGGCATATTGATCATTCTGCAAGGGTCATGAAAATAATTACATGGAATAGATCCTTTAAAGGAATGCAAAATGGCGATGATGGGAAAGATGACTTCGAAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - aaaaata
- - - - - - - - tgcatgc