1 5' 3' | 2 5' 3' | 3 5' 3' |
gtacgcgagctcctcctaaacgtagcgctaccagcccttctcccccctgcgtcgatggatctgacctgtgctcttgtccgtagTTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGGGAGCTCGCGGAGGACGGCTACTCCGGCGTGGAGGTGCGCGTCACACCGA
species | Zea mays |
transcript | GRMZM2G074300_T03 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCCATCTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAG TTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGGEST: gi|149078913|gb|EE167734.2|EE167734
genomic: CCCATCTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacgcgagc ... ttgtccgtagTTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
EST: CCCATCTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAG TTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGGEST: gi|211504917|gb|FL197047.1|FL197047
genomic: CCCATCTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacgcgagc ... ttgtccgtagTTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
EST: CCCATCTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAG TTCGTCAGCGACGGCGTATTCTACGCCGAGCTCAATGAGATGCTGACGCGGEST: gi|211507278|gb|FL197062.1|FL197062
genomic: CCCATCTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacgcgagc ... ttgtccgtagTTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
EST: CCCATCTTCCTCCGTTAACCATGGCGACCCAGATCAGCAAGAAGAAGAAG TTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGGEST: gi|211504910|gb|FL197040.1|FL197040
genomic: CCCATCTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacgcgagc ... ttgtccgtagTTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
EST: CCCATCTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAG TTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGGEST: gi|148955372|gb|EC900934.2|EC900934
genomic: CCCATCTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacgcgagc ... ttgtccgtagTTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
EST: CCCATCTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAG TTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGGEST: gi|211098262|gb|FL316231.1|FL316231
genomic: CCCATCTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacgcgagc ... ttgtccgtagTTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
EST: CCCATCTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAG TTCGTCAGCGACGGCGTGTTCTACGC-GAGGCTCAATGAGATGCTGACGCGEST: gi|211012588|gb|FL327135.1|FL327135
genomic: CCCATCTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacgcgagc ... ttgtccgtagTTCGTCAGCGACGGCGTGTTCTACGCCGAG-CTCAATGAGATGCTGACGCG
EST: CCCATCTTCCTCCGTTAACCATGGCGACCCAGATCAGCAAGAAGAAGAAG TTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGGEST: gi|211514358|gb|FL197097.1|FL197097
genomic: CCCATCTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacgcgagc ... ttgtccgtagTTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
EST: CCCATCTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAG TTCGTCAGCGACGGCGTGTTCTACGC-GAGCTCAATGAGATGCTGACGCGGEST: gi|211507277|gb|FL197061.1|FL197061
genomic: CCCATCTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacgcgagc ... ttgtccgtagTTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
EST: CCCATCTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAG TTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGGEST: gi|94479335|gb|EB708293.1|EB708293
genomic: CCCATCTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacgcgagc ... ttgtccgtagTTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
EST: CCATCTTCCTCCGTCAACCATGGCGACCCCAGATCAGCAAGAAGAAGAAG TTCGTCAGCGACCGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGEST: gi|78111606|gb|DV530003.1|DV530003
genomic: CCATCTTCCTCCGTCAACCATGGCGACCC-AGATCAGCAAGAAGAAGAAGgtacgcgagc ... ttgtccgtagTTCGTCAGCGAC-GGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCG
EST: CCCATCTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAG TTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGGEST: gi|211502560|gb|FL197032.1|FL197032
genomic: CCCATCTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacgcgagc ... ttgtccgtagTTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
EST: CCCATCTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAG TTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGGEST: gi|18661874|gb|BM501626.1|BM501626
genomic: CCCATCTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacgcgagc ... ttgtccgtagTTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
EST: CCCATCTTCCTCCGTTAACCATGGCGACCCAGATCAGCAAGAAGAAGAAG TTCG-CAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGGEST: gi|211372195|gb|FL196976.1|FL196976
genomic: CCCATCTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacgcgagc ... ttgtccgtagTTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
EST: CCCATCTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAG TTCGTCAGCGACGGCGTGTTCTACGCS-AGCTCAATGAGATGCTGACGCGGEST: gi|211372197|gb|FL196978.1|FL196978
genomic: CCCATCTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacgcgagc ... ttgtccgtagTTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
EST: CCCATCTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAG TTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGGEST: gi|9254139|gb|BE344607.1|BE344607
genomic: CCCATCTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacgcgagc ... ttgtccgtagTTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
EST: CCCATCTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAG TTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGGEST: gi|211377526|gb|FL197016.1|FL197016
genomic: CCCATCTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacgcgagc ... ttgtccgtagTTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
EST: CCCATCTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAG TTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
genomic: CCCATCTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacgcgagc ... ttgtccgtagTTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
taccagcccttctcccccctgcgtcgatggatctgacctgtgctcttgtccgtagTTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGGGAGCTCGCGGAGGACGGCTACTCCGGCGTGGAGGTGCGCGTCACACCGA
atctgac putative branch site (score: 3)
ctcttgtcc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgcgagctcctcctaaacgtagcgctaccagcccttctcccccctgcgtcgatggatctgacctgtgctcttgtccgtagTTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGGGAGCTCGCGGAGGACGGCTACTCCGGCGTGGAGGTGCGCGTCACACCGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG