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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atgaagaacacctaatttacaaacagatgttttcttttgaacttgattaatgcaaatcccttagtgttttaatactcttacaaattgcaatacgtcacagGGAGATACTGAGTGAACCAGTGCGGCGAATTGATGAAATCCTATCAATGCTGTACTCAACTGATGAATTTAAAGGCACTGATCTTCCTCCTAGTGATAAT

Basic information

species Zea mays
transcript GRMZM2G073988_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G073988_T02 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os08g34740.1 (Oryza sativa), 3'ss of exon 1
atgaagaacacctaatttacaaacagatgttt---tcttttgaacttgattaatgcaaatcccttagtgttttaatactcttacaaattgcaatacgtcacagGGAGATACTGAGTGAACCAGTGCGGCGAATTGATGAAATCCTATCAATGCTGTACTCAACTGATGAATTTAAAGGCACTGATCTTCCTCCTAGTGATAAT
 | || ||    ||| || |   ||  | |||   |  |  | |  |   | |||  ||    | | | |   | |  ||| | ||  |        |   ||||||||||| ||||  || ||||| |||||||||||||||||  | ||||  |||||  |||| |||||| |||||| ||| |||||||| || ||  ||
-tcaacaat--ttaacttgctctcaattctttcagtagtcagtaactatgtcatgtgaaatgttaattctaggagtgttctaataatgtttgtggtatgctagGGAGATACTAAGTGCTCCTGTGCGTCGAATTGATGAAATCCTTGCCATGCCATACTCGGCTGAGGAATTTGAAGGCAGTGACCTTCCTCCGAGCGACGAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attaatgcaaatcccttagtgttttaatactcttacaaattgcaatacgtcacagGGAGATACTGAGTGAACCAGTGCGGCGAATTGATGAAATCCTATCAATGCTGTACTCAACTGATGAATTTAAAGGCACTGATCTTCCTCCTAGTGATAAT
                             ctcttac  putative branch site (score: 3)
               ttagtgttttaata  TA-rich tract