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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacatcttatcatttttattttcttagccttcttccttgaagttcggttaactatttgtttgagttccacctgcctatgatagtatgaatctgcaatgcagGAGCTGAGTGCAATTGTTCCTGCCCGGGATAAACAGACCATCATAAAAACAGCTA

Basic information

species Zea mays
transcript GRMZM2G073934_T05
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G073934_T05 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os10g37430.1 (Oryza sativa), 3'ss of exon 7
-------------gtacatcttatcatttttattttcttagcct----tcttccttgaagttcggtt----aactat-ttgtttgagttccacctgccta----tgatagtatgaatctgcaatgcagGAGCTGAGTGCAATTGTTCCTGCCCGGGATAAACAGACCATCATAAAAACAGCTA--------
               || |||| | ||| |    |||| |  ||    | ||||||     || | |    | |||| ||   |  | |  |  |   |     |   ||||||||| || | ||||||| ||||||||||||||||| || || || || || |||||||||||||||||||        
gtaatcccacatttgacttcttgttattgtagccttctcaatctgggatattccttagctctctgctcttgagctatatttgctatgctgtattttttttcagctaggagtatgaatttgtattgcagGAACTGAGTGCAATTGTTCCGGCTCGTGAGAAGCAAACCATCATAAAAACAGCTATAAGTAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttaactatttgtttgagttccacctgcctatgatagtatgaatctgcaatgcagGAGCTGAGTGCAATTGTTCCTGCCCGGGATAAACAGACCATCATAAAAACAGCTA
 ggttaac  putative branch site (score: 3)
      tatttgttt  TA-rich tract