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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcagtatggttttatgggagaaactcctgagaagtgagaactcaacgaattacttttgatttttctagttatttacatgtgaaacacattatttttgcagGTCCATCTCACCAAATTCCCCAGCCTTCCGCCCTCATTTGAGCAGACACCTAAAGCCGTGGAGGAGCTCAAACTTGCAA

Basic information

species Zea mays
transcript GRMZM2G073077_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G073077_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os07g25420.2 (Oryza sativa), 3'ss of exon 1
-tcagtatggttttatgggagaaactcctgagaagtgagaactcaacgaattacttttgatttttctagttatttacatgtgaaacacattatttttgcagGTCCATCTCACCAAATTCCCCAGCCTTCCGCCCTCATTTGAGCAGACACCTAAAGCCGTGGAGGAGCTCAAACTTGCAA
 |    ||  || |    |   || ||       |    |     | |  | | |||||    ||  |  | || |||||||  || | |   || |||||||||  |||||||| |||||||||||||| || |||||| |||||||||| || || ||||| ||||| ||| |||| |
ttttagattattatcgaagtccaattctgatttggcactacagggaggtgtaaattttgtgaatttcatgtgttgacatgtggtacccctc-cttgtgcagGTCCGCCTCACCAAGTTCCCCAGCCTTCCTCCATCATTTCAGCAGACACCGAATGCAGTGGAAGAGCTGAAAATTGCGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211204476|gb|FL397886.1|FL397886
EST:     ACACCCGCAACGACCTCGACGCCTGCGTCACCCTCCTCTCACAGCTCAAG                         GTCCATCTCACCAAATTCCCCAGCCTTCCGCCCTCATTTGAGCAGACACCT
genomic: ACACCCGCAACGACCTCGACGCCTGCGTCACCCTCCTCTCACAGCTCAAGgtgcgatagc ... atttttgcagGTCCATCTCACCAAATTCCCCAGCCTTCCGCCCTCATTTGAGCAGACACCT
EST: gi|211221445|gb|FL389599.1|FL389599
EST:     ACACCCGCAACGACCTCGACGCCTGCGTCACCCTCCTCTCACAGCTCAAG                         GTCCATCTCACCAAATTCCCCAGCCTTCCGCCCTCATTTGAGCAGACACCT
genomic: ACACCCGCAACGACCTCGACGCCTGCGTCACCCTCCTCTCACAGCTCAAGgtgcgatagc ... atttttgcagGTCCATCTCACCAAATTCCCCAGCCTTCCGCCCTCATTTGAGCAGACACCT
EST: gi|23357704|gb|BU645353.1|BU645353
EST:     ACACCCGCAACGACCTCGACGCCTGCGTCACCCTCCTCTCACAGCTCAAG                         GTCCATCTCACCAAATTCCCCAGCCTTCCGCCCTCATTTGAGCAGACACCT
genomic: ACACCCGCAACGACCTCGACGCCTGCGTCACCCTCCTCTCACAGCTCAAGgtgcgatagc ... atttttgcagGTCCATCTCACCAAATTCCCCAGCCTTCCGCCCTCATTTGAGCAGACACCT
EST: gi|5555446|gb|AI881397.1|AI881397
EST:     ACACCCGCAACGACCTCGACGCCTGCGTCACCCTCCTCTCACAGCTCAAG                         GTCCATCTCACCAAATTCCCCAGCCTTCCGCCCTCATTTGAGCAGACACCT
genomic: ACACCCGCAACGACCTCGACGCCTGCGTCACCCTCCTCTCACAGCTCAAGgtgcgatagc ... atttttgcagGTCCATCTCACCAAATTCCCCAGCCTTCCGCCCTCATTTGAGCAGACACCT
EST: gi|211343978|gb|FL410639.1|FL410639
EST:     CACCCGCAACGACCTCGACGCCTGCGTCTACCCTCCTCTCACAGCTCAAG                         GTCCATCTCACCAAATTCCCCAGCCTTCCGCCCTCATTTGAGCAGACACCT
genomic: CACCCGCAACGACCTCGACGCCTGCGTC-ACCCTCCTCTCACAGCTCAAGgtgcgatagc ... atttttgcagGTCCATCTCACCAAATTCCCCAGCCTTCCGCCCTCATTTGAGCAGACACCT
EST: gi|211202662|gb|FL427928.1|FL427928
EST:     ACACCCGCAACGACCTCGACGCCTGCGTCACCCTCCTCTCACAGCTCAAG                         GTCCATCTCACCAAATTCCCCAGCCTTCCGCCCTCATTTGAGCAGACACCT
genomic: ACACCCGCAACGACCTCGACGCCTGCGTCACCCTCCTCTCACAGCTCAAGgtgcgatagc ... atttttgcagGTCCATCTCACCAAATTCCCCAGCCTTCCGCCCTCATTTGAGCAGACACCT
EST: gi|71428537|gb|DR809587.1|DR809587
EST:     ACACCCGCAACGACCTCGACGCCTGCGTCACCCTCCTCTCACAGCTCAAG                         GTCCATCTCACCAAATTCCCCAGCCTTCCGCCCTCATTTGAGCAGACACCT
genomic: ACACCCGCAACGACCTCGACGCCTGCGTCACCCTCCTCTCACAGCTCAAGgtgcgatagc ... atttttgcagGTCCATCTCACCAAATTCCCCAGCCTTCCGCCCTCATTTGAGCAGACACCT
EST: gi|21987255|gb|BQ778783.1|BQ778783
EST:     ACACCCGCAACGACCTCGACGCCTGCGTCACCCTCCTCTCACAGCTCAAG                         GTCCATCTCACCAAATTCCCCAGCCTTCCGCCCTCATTTGAGCAGACACCT
genomic: ACACCCGCAACGACCTCGACGCCTGCGTCACCCTCCTCTCACAGCTCAAGgtgcgatagc ... atttttgcagGTCCATCTCACCAAATTCCCCAGCCTTCCGCCCTCATTTGAGCAGACACCT
EST: gi|56382239|gb|CV984908.1|CV984908
EST:     ACACCCGCAACGACCTCGACGTCTGCGTCACCCTCCTCTCACAGCTCAAG                         GTCCATCTCACCAAATTCCCCAGCCTTCCGCCCTCATTTGAGCAGACACCT
genomic: ACACCCGCAACGACCTCGACGCCTGCGTCACCCTCCTCTCACAGCTCAAGgtgcgatagc ... atttttgcagGTCCATCTCACCAAATTCCCCAGCCTTCCGCCCTCATTTGAGCAGACACCT
EST: gi|211521193|gb|FL395748.1|FL395748
EST:     ACACCCGCAACGACCTCGACGCCTGCGTCACCCTCCTCTCACAGCTCAAG                         GTCCATCTCACCAAATTCCCCAGCCTTCCGCCCTCATTTGAGCAGACACCT
genomic: ACACCCGCAACGACCTCGACGCCTGCGTCACCCTCCTCTCACAGCTCAAGgtgcgatagc ... atttttgcagGTCCATCTCACCAAATTCCCCAGCCTTCCGCCCTCATTTGAGCAGACACCT
EST: gi|211466169|gb|FL380588.1|FL380588
EST:     ACACCCGCAACGACCTCGACGCCTGCGTCACCCTCCTCTCACAGCTCAAG                         GTCCATCTCACCAAATTCCCCAGCCTTCCGCCCTCATTTGAGCAGACACCT
genomic: ACACCCGCAACGACCTCGACGCCTGCGTCACCCTCCTCTCACAGCTCAAGgtgcgatagc ... atttttgcagGTCCATCTCACCAAATTCCCCAGCCTTCCGCCCTCATTTGAGCAGACACCT
EST: gi|211160049|gb|FL415236.1|FL415236
EST:     ACACCCGCAACGACCTCGACGCCTGCGTCACCCTCCTCTCACAGCTCAAG                         GTCCATCTCACCAAATTCCCCAGCCTTCCGCCCTCATTTGAGCAGACACCT
genomic: ACACCCGCAACGACCTCGACGCCTGCGTCACCCTCCTCTCACAGCTCAAGgtgcgatagc ... atttttgcagGTCCATCTCACCAAATTCCCCAGCCTTCCGCCCTCATTTGAGCAGACACCT
EST: gi|211045344|gb|FL397284.1|FL397284
EST:     CACCCGCAACGACCTCGACGCCTGCGTYAWCCCTCCTCTCACAGCTCAAG                         GTCCATCTCACCAAATTCCCCAGCCTTCCGCCCTCATTTGAGCAGACACCT
genomic: CACCCGCAACGACCTCGACGCCTGCGTCA-CCCTCCTCTCACAGCTCAAGgtgcgatagc ... atttttgcagGTCCATCTCACCAAATTCCCCAGCCTTCCGCCCTCATTTGAGCAGACACCT
EST: gi|211259601|gb|FL417871.1|FL417871
EST:     ACACCCGCAACGACCTCGACGCCTGCGTCACCCTCCTCTCACAGCTCAAG                         GTCCATCTCACCAAATTCCCCAGCCTTCCGCCCTCATTTGAGCAGACACCT
genomic: ACACCCGCAACGACCTCGACGCCTGCGTCACCCTCCTCTCACAGCTCAAGgtgcgatagc ... atttttgcagGTCCATCTCACCAAATTCCCCAGCCTTCCGCCCTCATTTGAGCAGACACCT
EST: gi|19057828|gb|BM736495.1|BM736495
EST:     ACACCCGCAACGACCTCGACGCCTGCGTCACCCTCCTCTCACAGCTCAAG                         GTCCATCTCACCAAATTCCCCAGCCTTCCGCCCTCATTTGAGCAGACACCT
genomic: ACACCCGCAACGACCTCGACGCCTGCGTCACCCTCCTCTCACAGCTCAAGgtgcgatagc ... atttttgcagGTCCATCTCACCAAATTCCCCAGCCTTCCGCCCTCATTTGAGCAGACACCT
EST: gi|120480690|gb|EH210959.1|EH210959
EST:     ACACCCGCAACGACCTCGACGCCTGCGTCACTCTCCTCTCACAGCTCAAG                         GTCCATCTCACCAAATTCCCCAGCCTTCCGCCCTCATTTGAGCAGACACCT
genomic: ACACCCGCAACGACCTCGACGCCTGCGTCACCCTCCTCTCACAGCTCAAGgtgcgatagc ... atttttgcagGTCCATCTCACCAAATTCCCCAGCCTTCCGCCCTCATTTGAGCAGACACCT
EST: gi|211149119|gb|FL417450.1|FL417450
EST:     ACACCCGCAACGACCTCGACGCCTGCGTCACCCTCCTCTCACAGCTCAAG                         GTCCATCTCACCAAATTCCCCAGCCTTCCGCCCTCATTTGAGCAGACACCT
genomic: ACACCCGCAACGACCTCGACGCCTGCGTCACCCTCCTCTCACAGCTCAAGgtgcgatagc ... atttttgcagGTCCATCTCACCAAATTCCCCAGCCTTCCGCCCTCATTTGAGCAGACACCT
EST: gi|211273315|gb|FL388187.1|FL388187
EST:     ACACCCGCAACGACCTCGACGCCTGCGTCACCCTCCTCTCACAGCTCAAG                         GTCCATCTCACCAAATTCCCCAGCCTTCCGCCCTCATTTGAGCAGACACCT
genomic: ACACCCGCAACGACCTCGACGCCTGCGTCACCCTCCTCTCACAGCTCAAGgtgcgatagc ... atttttgcagGTCCATCTCACCAAATTCCCCAGCCTTCCGCCCTCATTTGAGCAGACACCT
EST: gi|211238673|gb|FL405238.1|FL405238
EST:     ACACCCGCAACGACCTCGACGCCTGCGTCACCCTCCTCTCACAGCTCAAG                         GTCCATCTCACCAAATTCCCCAGCCTTCCGCCCTCATTTGAGCAGACACCT
genomic: ACACCCGCAACGACCTCGACGCCTGCGTCACCCTCCTCTCACAGCTCAAGgtgcgatagc ... atttttgcagGTCCATCTCACCAAATTCCCCAGCCTTCCGCCCTCATTTGAGCAGACACCT
EST: gi|211119379|gb|FL414341.1|FL414341
EST:     ACACCCGCAACGACCTCGACGCCTGCGTCACCCTCCTCTCACAGCTCAAG                         GTCCATCTCACCAAATTCCCCAGCCTTCCGCCCTCATTTGAGCAGACACCT
genomic: ACACCCGCAACGACCTCGACGCCTGCGTCACCCTCCTCTCACAGCTCAAGgtgcgatagc ... atttttgcagGTCCATCTCACCAAATTCCCCAGCCTTCCGCCCTCATTTGAGCAGACACCT
EST: gi|211244803|gb|FL372839.1|FL372839
EST:     ACACCCGCAACGACCTCGACGCCTGCGTCACCCTCCTCTCACAGCTCAAG                         GTCCATCTCACCAAATTCCCCAGCCTTCCGCCCTCATTTGAGCAGACACCT
genomic: ACACCCGCAACGACCTCGACGCCTGCGTCACCCTCCTCTCACAGCTCAAGgtgcgatagc ... atttttgcagGTCCATCTCACCAAATTCCCCAGCCTTCCGCCCTCATTTGAGCAGACACCT
EST: gi|76013187|gb|DT940357.1|DT940357
EST:     ACACCCGCAACGACCTCGACGCCTGCGTCACCCTCCTCTCACAGCTCAAG                         GTCCATCTCACCAAATTCCCCAGCCTTCCGCCCTCATTTGAGCAGACACCT
genomic: ACACCCGCAACGACCTCGACGCCTGCGTCACCCTCCTCTCACAGCTCAAGgtgcgatagc ... atttttgcagGTCCATCTCACCAAATTCCCCAGCCTTCCGCCCTCATTTGAGCAGACACCT
EST: gi|211123288|gb|FL412657.1|FL412657
EST:     ACACCCGCAACGACCTCGACGCCTGCGTCACCCTCCTCTCACAGCTCAAG                         GTCCATCTCACCAAATTCCCCAGCCTTCCGCCCTCATTTGAGCAGACACCT
genomic: ACACCCGCAACGACCTCGACGCCTGCGTCACCCTCCTCTCACAGCTCAAGgtgcgatagc ... atttttgcagGTCCATCTCACCAAATTCCCCAGCCTTCCGCCCTCATTTGAGCAGACACCT
EST: gi|32910399|gb|CF015211.1|CF015211
EST:     ACACCCGCAACGACCTCGACGCCTGCGTGACCCTCCTCTCACAGGTCAAG                         GTCCATCTCACCAAATTCCCCAGCCTTCCGCCCTCATTTGAGCAGACACCT
genomic: ACACCCGCAACGACCTCGACGCCTGCGTCACCCTCCTCTCACAGCTCAAGgtgcgatagc ... atttttgcagGTCCATCTCACCAAATTCCCCAGCCTTCCGCCCTCATTTGAGCAGACACCT
EST: gi|211488047|gb|FL401996.1|FL401996
EST:     ACACCCGCAACGACCTCGACGCCTGCGTCACCCTCCTCTCACAGCTCAAG                         GTCCATCTCACCAAATTCCCCAGCCTTCCGCCCTCATTTGAGCAGACACCT
genomic: ACACCCGCAACGACCTCGACGCCTGCGTCACCCTCCTCTCACAGCTCAAGgtgcgatagc ... atttttgcagGTCCATCTCACCAAATTCCCCAGCCTTCCGCCCTCATTTGAGCAGACACCT
EST: gi|211180868|gb|FL091536.1|FL091536
EST:     ACACCCGCAACGACCTCGACGCCTGCGTCACCCTCCTCTCACAGCTCAAG                         GTCCATCTCACCAAATTCCCCAGCCTTCCGCCCTCATTTGAGCAGACACCT
genomic: ACACCCGCAACGACCTCGACGCCTGCGTCACCCTCCTCTCACAGCTCAAGgtgcgatagc ... atttttgcagGTCCATCTCACCAAATTCCCCAGCCTTCCGCCCTCATTTGAGCAGACACCT
EST: gi|211071747|gb|FL413442.1|FL413442
EST:     ACACCCGCAACGACCTCGACGCCTGCGTCACCCTCCTCTCACAGCTCAAG                         GTCCATCTCACCAAATTCCCCAGCCTTCCGCCCTCATTTGAGCAGACACCT
genomic: ACACCCGCAACGACCTCGACGCCTGCGTCACCCTCCTCTCACAGCTCAAGgtgcgatagc ... atttttgcagGTCCATCTCACCAAATTCCCCAGCCTTCCGCCCTCATTTGAGCAGACACCT
EST: gi|15208820|gb|BI430704.1|BI430704
EST:     ACACCCGCAACGACCTCGACGCCTGCGTCACCCTCCTCTCACAGCTCAAG                         GTCCATCTCACCAAATTCCCCAGCCTTCCGCCCTCATTTGAGCAG
genomic: ACACCCGCAACGACCTCGACGCCTGCGTCACCCTCCTCTCACAGCTCAAGgtgcgatagc ... atttttgcagGTCCATCTCACCAAATTCCCCAGCCTTCCGCCCTCATTTGAGCAG
EST: gi|71331372|gb|DR802521.1|DR802521
EST:     ACACCCGCAACGACCTCGACGCCTGCGTCACCCTCCTCTCACAGCTCAAG                         GTCCATCTCACCAAATTCCCCAGCCTTCCGCCCTCATTTGAGCAGACACCT
genomic: ACACCCGCAACGACCTCGACGCCTGCGTCACCCTCCTCTCACAGCTCAAGgtgcgatagc ... atttttgcagGTCCATCTCACCAAATTCCCCAGCCTTCCGCCCTCATTTGAGCAGACACCT
EST: gi|211403085|gb|FL391554.1|FL391554
EST:     ACACCCGCAACGACCTCGACGCCTGCGTCACCCTCCTCTCACAGCTCAAG                         GTCCATCTCACCAAATTCCCCAGCCTTCCGCCCTCATTTGAGCAGACACCT
genomic: ACACCCGCAACGACCTCGACGCCTGCGTCACCCTCCTCTCACAGCTCAAGgtgcgatagc ... atttttgcagGTCCATCTCACCAAATTCCCCAGCCTTCCGCCCTCATTTGAGCAGACACCT
EST: gi|148947219|gb|EC892573.2|EC892573
EST:     ACACCCGCAACGACCTCGACGCCTGCGTCACCCTCCTCTCACAGCTCAAG                         GTCCATCTCACCAAATTCCCCAGCCTTCCGCCCTCATTTGAGCAGACACCT
genomic: ACACCCGCAACGACCTCGACGCCTGCGTCACCCTCCTCTCACAGCTCAAGgtgcgatagc ... atttttgcagGTCCATCTCACCAAATTCCCCAGCCTTCCGCCCTCATTTGAGCAGACACCT
EST: gi|211290626|gb|FL412730.1|FL412730
EST:     ACACCCGCAACGACCTCGACGCCTGCGTCACCCTCCTCTCACAGCTCAAG                         GTCCATCTCACCAAATTCCCCAGCCTTCCGCCCTCATTTGAGCAGACACCT
genomic: ACACCCGCAACGACCTCGACGCCTGCGTCACCCTCCTCTCACAGCTCAAGgtgcgatagc ... atttttgcagGTCCATCTCACCAAATTCCCCAGCCTTCCGCCCTCATTTGAGCAGACACCT
EST: gi|211257382|gb|FL426637.1|FL426637
EST:     ACACCCGCAACGACCTCGACGCCTGCGTCACCCTCCTCTCACAGCTCAAG                         GTCCATCTCACCAAATTCCCCAGCCTTCCGCCCTCATTTGAGCAGACACCT
genomic: ACACCCGCAACGACCTCGACGCCTGCGTCACCCTCCTCTCACAGCTCAAGgtgcgatagc ... atttttgcagGTCCATCTCACCAAATTCCCCAGCCTTCCGCCCTCATTTGAGCAGACACCT
EST: gi|56382240|gb|CV984909.1|CV984909
EST:     CTGCGTCACCCTCCTCTCACAGCTCAAG                         GTCCATCTCACCAAATTCCCCAGCCTTCCGCCCTCATTTGAGCAGACACCT
genomic: CTGCGTCACCCTCCTCTCACAGCTCAAGgtgcgatagc ... atttttgcagGTCCATCTCACCAAATTCCCCAGCCTTCCGCCCTCATTTGAGCAGACACCT
EST: gi|50327367|gb|CO522493.1|CO522493
EST:     ACACCCGCAACGACCTCGACGCCTGCGTCACCCTCCTCTCACAGCTCAAG                         GTCCATCTCACCAAATTCCCCAGCCTTCCGCCCTCATTTGAGCAGACACCT
genomic: ACACCCGCAACGACCTCGACGCCTGCGTCACCCTCCTCTCACAGCTCAAGgtgcgatagc ... atttttgcagGTCCATCTCACCAAATTCCCCAGCCTTCCGCCCTCATTTGAGCAGACACCT
EST: gi|32910449|gb|CF015261.1|CF015261
EST:     ACACCCGCAACGACCTCGACGCCTGCGTCACCCTCCTCTCACAGCTCAAG                         GGCCATCTCACCAAATTCCCCAGCCTTCCGCCCTCATTTGAGCAGACACCT
genomic: ACACCCGCAACGACCTCGACGCCTGCGTCACCCTCCTCTCACAGCTCAAGgtgcgatagc ... atttttgcagGTCCATCTCACCAAATTCCCCAGCCTTCCGCCCTCATTTGAGCAGACACCT
EST: gi|9255128|gb|BE345596.1|BE345596
EST:     ACACCCGCAACGACCTCGACGCCTGCGTCACCCTCCTCTCACAGCTCAAG                         GTCCATCTCACCAAATTCCCCAGCCTTCCGCCCTCATTTGAGCAGACACCT
genomic: ACACCCGCAACGACCTCGACGCCTGCGTCACCCTCCTCTCACAGCTCAAGgtgcgatagc ... atttttgcagGTCCATCTCACCAAATTCCCCAGCCTTCCGCCCTCATTTGAGCAGACACCT
EST: gi|211207035|gb|FL397427.1|FL397427
EST:     ACACCCGCAACGACCTCGACGCCTGCGTCACCCTCCTCTCACAGCTCAAG                         GTCCATCTCACCAAATTCCCCAGCCTTCCGCCCTCATTTGAGCAGACACCT
genomic: ACACCCGCAACGACCTCGACGCCTGCGTCACCCTCCTCTCACAGCTCAAGgtgcgatagc ... atttttgcagGTCCATCTCACCAAATTCCCCAGCCTTCCGCCCTCATTTGAGCAGACACCT
EST: gi|211311554|gb|FL415801.1|FL415801
EST:     ACACCCGCAACGACCTCGACGCCTGCGTCACCCTCCTCTCACAGCTCAAG                         GTCCATCTCACCAAATTCCCCAGCCTTCCGCCCTCATTTGAGCAGACACCT
genomic: ACACCCGCAACGACCTCGACGCCTGCGTCACCCTCCTCTCACAGCTCAAGgtgcgatagc ... atttttgcagGTCCATCTCACCAAATTCCCCAGCCTTCCGCCCTCATTTGAGCAGACACCT
EST: gi|211368876|gb|FL402356.1|FL402356
EST:     ACACCCGCAACGACCTCGACGCCTGCGTCACCCTCCTCTCACAGCTCAAG                         GTCCATCTCACCAAATTCCCCAGCCTTCCGCCCTCATTTGAGCAGACACCT
genomic: ACACCCGCAACGACCTCGACGCCTGCGTCACCCTCCTCTCACAGCTCAAGgtgcgatagc ... atttttgcagGTCCATCTCACCAAATTCCCCAGCCTTCCGCCCTCATTTGAGCAGACACCT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 47 (downstream exon)
Score: 495

TCCGAAGATGACAGAGGTGACCCAGATGTTCGCCCGCTTCAAGGCGGCCTACACCCGCAACGACCTCGACGCCTGCGTCACCCTCCTCTCACAGCTCAAGgtgcgatagc ... atttttgcagGTCCATCTCACCAAATTCCCCAGCCTTCCGCCCTCATTTGAGCAGACACCTAAAGCCGTGGAGGAGCTCAAACTTGCAA


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 289

TCCGAAGATGACAGAGGTGACCCAGATGTTCGCCCGCTTCAAGGCGGCCTACACCCGCAACGACCTCGACGCCTGCGTCACCCTCCTCTCACAGCTCAAGgtgcgatagc ... atttttgcagGTCCATCTCACCAAATTCCCCAGCCTTCCGCCCTCATTTGAGCAGACACCTAAAGCCGTGGAGGAGCTCAAACTTGCAA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 169

TCCGAAGATGACAGAGGTGACCCAGATGTTCGCCCGCTTCAAGGCGGCCTACACCCGCAACGACCTCGACGCCTGCGTCACCCTCCTCTCACAGCTCAAGgtgcgatagc ... atttttgcagGTCCATCTCACCAAATTCCCCAGCCTTCCGCCCTCATTTGAGCAGACACCTAAAGCCGTGGAGGAGCTCAAACTTGCAA


Block sizes: 49 (upstream exon), 47 (downstream exon)
Score: 409

TCCGAAGATGACAGAGGTGACCCAGATGTTCGCCCGCTTCAAGGCGGCCTACACCCGCAACGACCTCGACGCCTGCGTCACCCTCCTCTCACAGCTCAAGgtgcgatagc ... atttttgcagGTCCATCTCACCAAATTCCCCAGCCTTCCGCCCTCATTTGAGCAGACACCTAAAGCCGTGGAGGAGCTCAAACTTGCAA




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgaattacttttgatttttctagttatttacatgtgaaacacattatttttgcagGTCCATCTCACCAAATTCCCCAGCCTTCCGCCCTCATTTGAGCAGACACCTAAAGCCGTGGAGGAGCTCAAACTTGCAA
        ttttgat  putative branch site (score: 409)
                                           ttattttt  putative PPT
        ttttgatttttctagt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tcagtatggttttatgggagaaactcctgagaagtgagaactcaacgaattacttttgatttttctagttatttacatgtgaaacacattatttttgcagGTCCATCTCACCAAATTCCCCAGCCTTCCGCCCTCATTTGAGCAGACACCTAAAGCCGTGGAGGAGCTCAAACTTGCAA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - -ctcctga
- - - - - - - - - - - - - - - - - - - - - caacgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgtga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacacat