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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tttcatacatgcttgcatttatatatatgtgattgtattctttacatacagaccctcttcagttggttcctttcagtctaactgcccttacattttgcagGTAGGTCTTATCTATGTTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCAATAAGCTTTTCTCAG

Basic information

species Zea mays
transcript GRMZM2G072865_T04
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G072865_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os02g43350.1 (Oryza sativa), 3'ss of exon 1
tttcatacatgcttgcatttatatatatgtgattgtattctttacatacagaccctcttc--agttggttcctttcagtctaac--tgcccttacattt--tgcagGTAGGTCTTATCTATGTTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCAATAAGCTTTTCTCAG
     |   |  ||   ||  ||  |   |   | ||||    | ||||||  |    ||  || ||  |  |||    |||||  ||||||||  |||  ||||||| | |||||| ||||||||||| ||||| |||||| |||||||  ||||||||||||||||||||
----ctgtttcattttgttcctaacttctt--ctttattagaaatatacagctctctctcctagctgcgtttttttgtcctaaccatgcccttattttttttgcagGTGGCTCTTATTTATGTTGTATTAATTGCTGTAGTTCTGCAGCGATTGCCAATAAGCTTTTCTCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32926844|gb|CF031656.1|CF031656
EST:     AATTTGGGTCACCGGACAAGAGGTCTGGCGGCATGCTCAATTCTGCCCTG                         GTAGGTCTTATCTATGTTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCA
genomic: AATTTGGGTCACCGGACAAGAGGTCTGGCGGCATGCTCAATTCTGCCCTGgtaaggcact ... cattttgcagGTAGGTCTTATCTATGTTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCA
EST: gi|32926579|gb|CF031391.1|CF031391
EST:     AATTTGGGTCACCGGACAAGAGGTCTGGCGGCATGCTCAATTCTGCCCTG                         GTAGGTCTTATCTATGTTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCA
genomic: AATTTGGGTCACCGGACAAGAGGTCTGGCGGCATGCTCAATTCTGCCCTGgtaaggcact ... cattttgcagGTAGGTCTTATCTATGTTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCA
EST: gi|32925914|gb|CF030726.1|CF030726
EST:     AATTTGGGTCACCGGACAAGAGGTCTGGCGGCATGCTCAATTCTGCCCTG                         GTAGGTCTTATCTATGTTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCA
genomic: AATTTGGGTCACCGGACAAGAGGTCTGGCGGCATGCTCAATTCTGCCCTGgtaaggcact ... cattttgcagGTAGGTCTTATCTATGTTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCA
EST: gi|32929777|gb|CF034589.1|CF034589
EST:     AATTTGGGTCACCGGACAAGAGGTCTGGCGGCATGCTCAATTCTGCCCTG                         GTAGGTCTTATCTATGTTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCA
genomic: AATTTGGGTCACCGGACAAGAGGTCTGGCGGCATGCTCAATTCTGCCCTGgtaaggcact ... cattttgcagGTAGGTCTTATCTATGTTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCA
EST: gi|32924793|gb|CF029605.1|CF029605
EST:     AATTTGGGTCACCGGACAAGAGGTCTGGCGGCATGCTCAATTCTGCCCTG                         GTAGGTCTTATCTATGTTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCA
genomic: AATTTGGGTCACCGGACAAGAGGTCTGGCGGCATGCTCAATTCTGCCCTGgtaaggcact ... cattttgcagGTAGGTCTTATCTATGTTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCA
EST: gi|32925296|gb|CF030108.1|CF030108
EST:     AATTTGGGTCACCGGACAAGAGGTCTGGCGGCATGCTCAATTCTGCCCTG                         GTAGGTCTTATCTATGTTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCA
genomic: AATTTGGGTCACCGGACAAGAGGTCTGGCGGCATGCTCAATTCTGCCCTGgtaaggcact ... cattttgcagGTAGGTCTTATCTATGTTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCA
EST: gi|32926564|gb|CF031376.1|CF031376
EST:     AATTTGGGTCACCGGACAAGAGGTCTGGCGGCATGCTCAATTCTGCCCTG                         GTAGGTCTTATCTATGTTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCA
genomic: AATTTGGGTCACCGGACAAGAGGTCTGGCGGCATGCTCAATTCTGCCCTGgtaaggcact ... cattttgcagGTAGGTCTTATCTATGTTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCA
EST: gi|32925381|gb|CF030193.1|CF030193
EST:     AATTTGGGTCACTGGACAAGAGGTCTGGCGGCATGCTCAATTCTGCCCTG                         GTAGGTCTTATCTATGTTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCA
genomic: AATTTGGGTCACCGGACAAGAGGTCTGGCGGCATGCTCAATTCTGCCCTGgtaaggcact ... cattttgcagGTAGGTCTTATCTATGTTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atacagaccctcttcagttggttcctttcagtctaactgcccttacattttgcagGTAGGTCTTATCTATGTTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCAATAAGCTTTTCTCAG
                                       cccttac  CT-rich tract
                                          ttacatttt  TA-rich tract