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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tttcatacatgcttgcatttatatatatgtgattgtattctttacatacagaccctcttcagttggttcctttcagtctaactgcccttacattttgcagGTAGGTCTTATCTATGTTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCAATAAGCTTTTCTCAG

Basic information

species Zea mays
transcript GRMZM2G072865_T02
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G072865_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os02g43350.1 (Oryza sativa), 3'ss of exon 1
tttcatacatgcttgcatttatatatatgtgattgtattctttacatacagaccctcttc--agttggttcctttcagtctaac--tgcccttacattt--tgcagGTAGGTCTTATCTATGTTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCAATAAGCTTTTCTCAG
     |   |  ||   ||  ||  |   |   | ||||    | ||||||  |    ||  || ||  |  |||    |||||  ||||||||  |||  ||||||| | |||||| ||||||||||| ||||| |||||| |||||||  ||||||||||||||||||||
----ctgtttcattttgttcctaacttctt--ctttattagaaatatacagctctctctcctagctgcgtttttttgtcctaaccatgcccttattttttttgcagGTGGCTCTTATTTATGTTGTATTAATTGCTGTAGTTCTGCAGCGATTGCCAATAAGCTTTTCTCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32926057|gb|CF030869.1|CF030869
EST:     AATTTGGGTCACCGGACAAGAGGTCTGGCGGCATGCTCAATTCTGCCCTG                         GTAGGTCTTATCTATGTTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCA
genomic: AATTTGGGTCACCGGACAAGAGGTCTGGCGGCATGCTCAATTCTGCCCTGgtaaggcact ... cattttgcagGTAGGTCTTATCTATGTTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCA
EST: gi|32926564|gb|CF031376.1|CF031376
EST:     AATTTGGGTCACCGGACAAGAGGTCTGGCGGCATGCTCAATTCTGCCCTG                         GTAGGTCTTATCTATGTTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCA
genomic: AATTTGGGTCACCGGACAAGAGGTCTGGCGGCATGCTCAATTCTGCCCTGgtaaggcact ... cattttgcagGTAGGTCTTATCTATGTTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCA
EST: gi|32925893|gb|CF030705.1|CF030705
EST:     CATGCTCAATTCTGCCCTG                         GTAGGTCTTATCTATGTTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCA
genomic: CATGCTCAATTCTGCCCTGgtaaggcact ... cattttgcagGTAGGTCTTATCTATGTTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCA
EST: gi|32926389|gb|CF031201.1|CF031201
EST:     AATTTGGGTCACCGGACAAGAGGTCTGGCGGCATGCTCAATTCTGCCCTG                         GTAGGTCTTATCTATGTTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCA
genomic: AATTTGGGTCACCGGACAAGAGGTCTGGCGGCATGCTCAATTCTGCCCTGgtaaggcact ... cattttgcagGTAGGTCTTATCTATGTTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCA
EST: gi|32920740|gb|CF025552.1|CF025552
EST:     AATTTGGGTCACCGGACAAGAGGTCTGGCGGCATGCTCAATTCTGCCCTG                         GTAGGTCTTATCTATGTTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCA
genomic: AATTTGGGTCACCGGACAAGAGGTCTGGCGGCATGCTCAATTCTGCCCTGgtaaggcact ... cattttgcagGTAGGTCTTATCTATGTTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCA
EST: gi|32925408|gb|CF030220.1|CF030220
EST:     AATTTGGGTCACCGGACAAGAGGTCTGGCGGCATGCTCAATTCTGCCCTG                         GTAGGTCTTATCTATGTTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCA
genomic: AATTTGGGTCACCGGACAAGAGGTCTGGCGGCATGCTCAATTCTGCCCTGgtaaggcact ... cattttgcagGTAGGTCTTATCTATGTTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCA
EST: gi|32925076|gb|CF029888.1|CF029888
EST:     AATTTGGGTCACCGGACAAGAGGTCTGGCGGCATGCTCAATTCTGCCCTG                         GTAGGTCTTATCTATGTTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCA
genomic: AATTTGGGTCACCGGACAAGAGGTCTGGCGGCATGCTCAATTCTGCCCTGgtaaggcact ... cattttgcagGTAGGTCTTATCTATGTTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCA
EST: gi|32921801|gb|CF026613.1|CF026613
EST:     AATTTGGGTCACCGGACAAGAGGTCTGGCGGCATGCTCAATTCTGCCCTG                         GTAGGTCTTATCTATGTTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCA
genomic: AATTTGGGTCACCGGACAAGAGGTCTGGCGGCATGCTCAATTCTGCCCTGgtaaggcact ... cattttgcagGTAGGTCTTATCTATGTTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCA
EST: gi|32925574|gb|CF030386.1|CF030386
EST:     AATTTGGGTCACCGGACAAGAGGTCTGGCGGCATGCTCAATTCTGCCCTG                         GTAGGTCTTATCTATGTTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCA
genomic: AATTTGGGTCACCGGACAAGAGGTCTGGCGGCATGCTCAATTCTGCCCTGgtaaggcact ... cattttgcagGTAGGTCTTATCTATGTTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCA
EST: gi|32929777|gb|CF034589.1|CF034589
EST:     AATTTGGGTCACCGGACAAGAGGTCTGGCGGCATGCTCAATTCTGCCCTG                         GTAGGTCTTATCTATGTTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCA
genomic: AATTTGGGTCACCGGACAAGAGGTCTGGCGGCATGCTCAATTCTGCCCTGgtaaggcact ... cattttgcagGTAGGTCTTATCTATGTTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCA
EST: gi|32925209|gb|CF030021.1|CF030021
EST:     AATTTGGGTCACCGGACAAGAGGTCTGGCGGCATGCTCAATTCTGCCCTG                         GTAGGTCTTATCTATGTTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCA
genomic: AATTTGGGTCACCGGACAAGAGGTCTGGCGGCATGCTCAATTCTGCCCTGgtaaggcact ... cattttgcagGTAGGTCTTATCTATGTTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCA
EST: gi|32926924|gb|CF031736.1|CF031736
EST:     AATNTGGGTCACCGGACAAGAGGTCTGGCGGCATGCTCAATTCTGCCCTG                         GTAGGTCTTATCTATGTTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCA
genomic: AATTTGGGTCACCGGACAAGAGGTCTGGCGGCATGCTCAATTCTGCCCTGgtaaggcact ... cattttgcagGTAGGTCTTATCTATGTTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCA
EST: gi|32925914|gb|CF030726.1|CF030726
EST:     AATTTGGGTCACCGGACAAGAGGTCTGGCGGCATGCTCAATTCTGCCCTG                         GTAGGTCTTATCTATGTTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCA
genomic: AATTTGGGTCACCGGACAAGAGGTCTGGCGGCATGCTCAATTCTGCCCTGgtaaggcact ... cattttgcagGTAGGTCTTATCTATGTTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCA
EST: gi|32926579|gb|CF031391.1|CF031391
EST:     AATTTGGGTCACCGGACAAGAGGTCTGGCGGCATGCTCAATTCTGCCCTG                         GTAGGTCTTATCTATGTTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCA
genomic: AATTTGGGTCACCGGACAAGAGGTCTGGCGGCATGCTCAATTCTGCCCTGgtaaggcact ... cattttgcagGTAGGTCTTATCTATGTTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCA
EST: gi|32921452|gb|CF026264.1|CF026264
EST:     AATTTGGGTCACCGGACAAGAGGTCTGGCGGCATGCTCAATTCTGCCCTG                         GTAGGTCTTATCTATGTTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCA
genomic: AATTTGGGTCACCGGACAAGAGGTCTGGCGGCATGCTCAATTCTGCCCTGgtaaggcact ... cattttgcagGTAGGTCTTATCTATGTTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCA
EST: gi|32924865|gb|CF029677.1|CF029677
EST:     AATTTGGGTCACCGGACAAGAGGTCTGGCGGCATGCTCAATTCTGCCCTG                         GTAGGTCTTATCTATGTTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCA
genomic: AATTTGGGTCACCGGACAAGAGGTCTGGCGGCATGCTCAATTCTGCCCTGgtaaggcact ... cattttgcagGTAGGTCTTATCTATGTTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCA
EST: gi|211013709|gb|FL252303.1|FL252303
EST:     AATTTGGGTCACCGGACAAGAGGTCTGGCGGCATGCTCAATTCTGCCCTG                         GTAGGTCTTATCTATGTTGTATTGATTGCGGTAGTTTTGCAGCGCCCTGCC
genomic: AATTTGGGTCACCGGACAAGAGGTCTGGCGGCATGCTCAATTCTGCCCTGgtaaggcact ... cattttgcagGTAGGTCTTATCTATGTTGTATTGATTGCGGTAGTTTTGCAGCG-CCTGCC
EST: gi|32925973|gb|CF030785.1|CF030785
EST:     AATTTGGGTCACCGGACAAGAGGTCTGGCGGCATGCTCAATTCTGCCCTG                         GTAGGTCTTATCTATGTTGTATTGATTGCGGTAGTTTTACAGCGCCTGCCA
genomic: AATTTGGGTCACCGGACAAGAGGTCTGGCGGCATGCTCAATTCTGCCCTGgtaaggcact ... cattttgcagGTAGGTCTTATCTATGTTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCA
EST: gi|32924793|gb|CF029605.1|CF029605
EST:     AATTTGGGTCACCGGACAAGAGGTCTGGCGGCATGCTCAATTCTGCCCTG                         GTAGGTCTTATCTATGTTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCA
genomic: AATTTGGGTCACCGGACAAGAGGTCTGGCGGCATGCTCAATTCTGCCCTGgtaaggcact ... cattttgcagGTAGGTCTTATCTATGTTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCA
EST: gi|32925993|gb|CF030805.1|CF030805
EST:     AATTTGGGTCACCGGACAAGAGGTCTGGCGGCATGCTCAATTCTGCCCTG                         GTAGGTCTTATCTATGTTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCA
genomic: AATTTGGGTCACCGGACAAGAGGTCTGGCGGCATGCTCAATTCTGCCCTGgtaaggcact ... cattttgcagGTAGGTCTTATCTATGTTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCA
EST: gi|32925153|gb|CF029965.1|CF029965
EST:     AATTTGGGTCACCGGACAAGAGGTCTGGCGGCATGCTCAATTCTGCCCTG                         GTAGGTCTTATCTATGTTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCA
genomic: AATTTGGGTCACCGGACAAGAGGTCTGGCGGCATGCTCAATTCTGCCCTGgtaaggcact ... cattttgcagGTAGGTCTTATCTATGTTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCA
EST: gi|32926414|gb|CF031226.1|CF031226
EST:     AATTTGGGTCACCAGACAAGAGGTCTGGCGGCATGCTCAATTCTGCCCTG                         GTAGGTCTTATCTATGTTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCA
genomic: AATTTGGGTCACCGGACAAGAGGTCTGGCGGCATGCTCAATTCTGCCCTGgtaaggcact ... cattttgcagGTAGGTCTTATCTATGTTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCA
EST: gi|32925765|gb|CF030577.1|CF030577
EST:     AATTTGGGTCACCGGACAAGAGGTCTGGCGGCATGCTCAATTCTGCCCTG                         GTAGGTCTTATCTATGTTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCA
genomic: AATTTGGGTCACCGGACAAGAGGTCTGGCGGCATGCTCAATTCTGCCCTGgtaaggcact ... cattttgcagGTAGGTCTTATCTATGTTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCA
EST: gi|32925463|gb|CF030275.1|CF030275
EST:     AATTTGGGTCACCGGACAAGAGGTCTGGCGGCATGCTCAATTCTGCCCTG                         GTAGGTCTTATCTATGTTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCA
genomic: AATTTGGGTCACCGGACAAGAGGTCTGGCGGCATGCTCAATTCTGCCCTGgtaaggcact ... cattttgcagGTAGGTCTTATCTATGTTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCA
EST: gi|32926327|gb|CF031139.1|CF031139
EST:     AATTTGGGTCACCAGACAAGAGGTCTGGTGGCATGCTCAATTCTGCCCTG                         GTAGGTCTTATCTATGTTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCA
genomic: AATTTGGGTCACCGGACAAGAGGTCTGGCGGCATGCTCAATTCTGCCCTGgtaaggcact ... cattttgcagGTAGGTCTTATCTATGTTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCA
EST: gi|32926844|gb|CF031656.1|CF031656
EST:     AATTTGGGTCACCGGACAAGAGGTCTGGCGGCATGCTCAATTCTGCCCTG                         GTAGGTCTTATCTATGTTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCA
genomic: AATTTGGGTCACCGGACAAGAGGTCTGGCGGCATGCTCAATTCTGCCCTGgtaaggcact ... cattttgcagGTAGGTCTTATCTATGTTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCA
EST: gi|32926278|gb|CF031090.1|CF031090
EST:     AATTTGGGTCACCGGACAAGAGGTCTGGCGGCATGCTCAATTCTGCCCTG                         GTAGGTCTTATCTATGTTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCA
genomic: AATTTGGGTCACCGGACAAGAGGTCTGGCGGCATGCTCAATTCTGCCCTGgtaaggcact ... cattttgcagGTAGGTCTTATCTATGTTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCA
EST: gi|32925296|gb|CF030108.1|CF030108
EST:     AATTTGGGTCACCGGACAAGAGGTCTGGCGGCATGCTCAATTCTGCCCTG                         GTAGGTCTTATCTATGTTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCA
genomic: AATTTGGGTCACCGGACAAGAGGTCTGGCGGCATGCTCAATTCTGCCCTGgtaaggcact ... cattttgcagGTAGGTCTTATCTATGTTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCA
EST: gi|32921284|gb|CF026096.1|CF026096
EST:     AATTTGGGTCACCGGACAAGAGGTCTGGCGGCATGCTCAATTCTGCCCTG                         GTAGGTCTTATCTATGTTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCA
genomic: AATTTGGGTCACCGGACAAGAGGTCTGGCGGCATGCTCAATTCTGCCCTGgtaaggcact ... cattttgcagGTAGGTCTTATCTATGTTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCA
EST: gi|32925438|gb|CF030250.1|CF030250
EST:     AATTTGGGTCACCGGACAAGAGGTCTGGCGGCATGCTCAATTCTGCCCTG                         GTAGGTCTTATCTATGTTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCA
genomic: AATTTGGGTCACCGGACAAGAGGTCTGGCGGCATGCTCAATTCTGCCCTGgtaaggcact ... cattttgcagGTAGGTCTTATCTATGTTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCA
EST: gi|32929308|gb|CF034120.1|CF034120
EST:     AATTTGGGTCACCGGACAAGAGGTCTGGCGGCATGCTCAATTCTGCCCTG                         GTAGGTCTTATCTATGTTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCA
genomic: AATTTGGGTCACCGGACAAGAGGTCTGGCGGCATGCTCAATTCTGCCCTGgtaaggcact ... cattttgcagGTAGGTCTTATCTATGTTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCA
EST: gi|32926859|gb|CF031671.1|CF031671
EST:     AATTTGGGTCACCGGACAAGAGGTCTGGCGGCATGCTCAATTCTGCCCTG                         GTAGGTCTTATCTATGTTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCA
genomic: AATTTGGGTCACCGGACAAGAGGTCTGGCGGCATGCTCAATTCTGCCCTGgtaaggcact ... cattttgcagGTAGGTCTTATCTATGTTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCA
EST: gi|32929127|gb|CF033939.1|CF033939
EST:     GCATGCTCAATTCTGCCCTG                         GTAGGTCTTATCTATGTTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCA
genomic: GCATGCTCAATTCTGCCCTGgtaaggcact ... cattttgcagGTAGGTCTTATCTATGTTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCA
EST: gi|32925831|gb|CF030643.1|CF030643
EST:     AATTTGGGTCACCGGACAAGAGGTCTGGCGGCATGCTCAATTCTGCCCTG                         GTAGGTCTTATCTATGTTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCA
genomic: AATTTGGGTCACCGGACAAGAGGTCTGGCGGCATGCTCAATTCTGCCCTGgtaaggcact ... cattttgcagGTAGGTCTTATCTATGTTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCA
EST: gi|32926839|gb|CF031651.1|CF031651
EST:     AATTTGGGTCACCGGACAAGAGGTCTGNCGGCATGCTCAATTCTGCCCTG                         GTAGGTCTTATCTATGTTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCA
genomic: AATTTGGGTCACCGGACAAGAGGTCTGGCGGCATGCTCAATTCTGCCCTGgtaaggcact ... cattttgcagGTAGGTCTTATCTATGTTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atacagaccctcttcagttggttcctttcagtctaactgcccttacattttgcagGTAGGTCTTATCTATGTTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCAATAAGCTTTTCTCAG
                                       cccttac  CT-rich tract
                                          ttacatttt  TA-rich tract