1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ctaatatagctcgcaatcattcccatcgtcctccatggactcatgcatctgtgcggtgctcgcctagcttaattagttggttgcctaactacatgtgcagAGCGGGGCTAGTCGGAGGAGATCAGGAGCGCTGCACCGCAGCTCTCCTGTCAAAGGGCATGGACGATTGGGGGGATCACGCTGCGACTGCAAGCGCGGCG
species | Zea mays |
transcript | GRMZM2G072238_T03 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGCGGCCAGGAGAACCACCACATGCCGGAGTCGTGGAGCCAGATGCTTCT AGCGGGGCTAGTCGGAGGAGATCAGGAGCGCTGCACCGCAGCTCTCCTGTCEST: gi|78091301|gb|DV519675.1|DV519675
genomic: GGCGGCCAGGAGAACCACCACATGCCGGAGTCGTGGAGCCAGATGCTTCTgtaaacacct ... acatgtgcagAGCGGGGCTAGTCGGAGGAGATCAGGAGCGCTGCACCGCAGCTCTCCTGTC
EST: GGCGGCCAGGAGAACCACCACATGCCGGAGTCGTGGAGCCAGATGCTTCT AGCGGGGCTAGTCGGAGGAGATCAGGAGCGCTGCACCGCAGCTCTCCTGTCEST: gi|50323405|gb|CO518531.1|CO518531
genomic: GGCGGCCAGGAGAACCACCACATGCCGGAGTCGTGGAGCCAGATGCTTCTgtaaacacct ... acatgtgcagAGCGGGGCTAGTCGGAGGAGATCAGGAGCGCTGCACCGCAGCTCTCCTGTC
EST: GGCGGCCAGGAGAACCACCACATGCCGGAGTCGTGGAGCCAGATGCTTCT AGCGGGGCTAGTCGGAGGAGATCAGGAGCGCTGCACCGCAGCTCTCCTGTCEST: gi|74235442|gb|DT643356.1|DT643356
genomic: GGCGGCCAGGAGAACCACCACATGCCGGAGTCGTGGAGCCAGATGCTTCTgtaaacacct ... acatgtgcagAGCGGGGCTAGTCGGAGGAGATCAGGAGCGCTGCACCGCAGCTCTCCTGTC
EST: GCGGCCAGGAGAACCACCACATGCCGGAGTCGTGGAGCCAGATGCTTTCT AGCGGG-CTAGTCGGAAGAGATCAGGAGCGCCGCAC
genomic: GCGGCCAGGAGAACCACCACATGCCGGAGTCGTGGAGCCAGATGCTT-CTgtaaacacct ... acatgtgcagAGCGGGGCTAGTCGGAGGAGATCAGGAGCGCTGCAC
catctgtgcggtgctcgcctagcttaattagttggttgcctaactacatgtgcagAGCGGGGCTAGTCGGAGGAGATCAGGAGCGCTGCACCGCAGCTCTCCTGTCAAAGGGCATGGACGATTGGGGGGATCACGCTGCGACTGCAAGCGCGGCG
gcctaac putative branch site (score: 2)
ttaattagtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctaatatagctcgcaatcattcccatcgtcctccatggactcatgcatctgtgcggtgctcgcctagcttaattagttggttgcctaactacatgtgcagAGCGGGGCTAGTCGGAGGAGATCAGGAGCGCTGCACCGCAGCTCTCCTGTCAAAGGGCATGGACGATTGGGGGGATCACGCTGCGACTGCAAGCGCGGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - -cattccc
- - - - - - - - - - - - - - - - -catggac
- - - - - - - - - - - - - - - - - - - - tcatgca
- - - - - - - - - - - - - - - - - - - - - - - - -tgtgcgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggttgc