1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gcacttagccttttagttaacattttgtcaatttagatgtgatgctgccaaagcaagaatatctgatttggttcgtgtttgattcaattttcaaccttagTTCCAACAAAGGCGATCGTAAACAGTGATGGCATCCCTGAAACGAGTGATTCTCCACATGTGGTTTGCTTTGGTGAATTGCTAATTGACTTCGTCCCAAC
species | Zea mays |
transcript | GRMZM2G072091_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGCGAGTCCCCGCGGCGTTGTCTCTGCCGCGCCGCTACGGACACGCGCAG TTCCAACAAAGGCGATCGTAAACAGTGATGGCATCCCTGAAACGAGTGATTEST: gi|211319361|gb|FL167949.1|FL167949
genomic: CGCGAGTCCCCGCGGCGTTGTCTCTGCCGCGCCGCTACGGACACGCGCAGgtactcggtg ... tcaaccttagTTCCAACAAAGGCGATCGTAAACAGTGATGGCATCCCTGAAACGAGTGATT
EST: CGCGAGTSCCCGCGGCGTTGTCTCTGCCGCGCCGCTACGGACACGCGCAG TTCCAACAAAGGCGATCGTAAACAGTGATGGCATCCCTGAAACGAGTGATTEST: gi|211319359|gb|FL167947.1|FL167947
genomic: CGCGAGTCCCCGCGGCGTTGTCTCTGCCGCGCCGCTACGGACACGCGCAGgtactcggtg ... tcaaccttagTTCCAACAAAGGCGATCGTAAACAGTGATGGCATCCCTGAAACGAGTGATT
EST: GGCGTTGTCTCTGCCGCGCCGCTACGGACACGCGCAG TTCCAACAAAGGCGATCGTAAACAGTGATGGCATCCCTGAAACGAGTGATTEST: gi|89247632|gb|DY619418.1|DY619418
genomic: GGCGTTGTCTCTGCCGCGCCGCTACGGACACGCGCAGgtactcggtg ... tcaaccttagTTCCAACAAAGGCGATCGTAAACAGTGATGGCATCCCTGAAACGAGTGATT
EST: CGCGAGTCCCCGCGGCGTTGTCTCTGCCGCGCCGCTACGGACACGCGCAG TTCCAACAAAGGCGATCGTAAACAGTGATGGCATCCCTGAAACGAGTGATTEST: gi|76016703|gb|DT943873.1|DT943873
genomic: CGCGAGTCCCCGCGGCGTTGTCTCTGCCGCGCCGCTACGGACACGCGCAGgtactcggtg ... tcaaccttagTTCCAACAAAGGCGATCGTAAACAGTGATGGCATCCCTGAAACGAGTGATT
EST: CGCGAGTCCCCGCGGCGTTGTCTCTGCCGCGCCGCTACGGACACGCGCAG TTCCAACAAAGGCGATCGTAAACAGTGATGGCATCCCTGAAACGAGTGATTEST: gi|211319362|gb|FL167950.1|FL167950
genomic: CGCGAGTCCCCGCGGCGTTGTCTCTGCCGCGCCGCTACGGACACGCGCAGgtactcggtg ... tcaaccttagTTCCAACAAAGGCGATCGTAAACAGTGATGGCATCCCTGAAACGAGTGATT
EST: CGCGAGTCCCCGCGGCGTTGTCTCTGCCGCGCCGCTACGGACACGCGCAG TTCCAACAAAGGCGATCGTAAACAGTGATGGCATCCCTGAAACGAATGATTEST: gi|71309767|gb|DR791165.1|DR791165
genomic: CGCGAGTCCCCGCGGCGTTGTCTCTGCCGCGCCGCTACGGACACGCGCAGgtactcggtg ... tcaaccttagTTCCAACAAAGGCGATCGTAAACAGTGATGGCATCCCTGAAACGAGTGATT
EST: CGCGAGTCCCCGCGGCGTTGTCTCTGCCGCGCCGCTACGGACACGCGCAG TTCCAACAAAGGCGATCGTAAACAGTGATGGCATCCCTGGAACGAGTGATTEST: gi|71443889|gb|DR824939.1|DR824939
genomic: CGCGAGTCCCCGCGGCGTTGTCTCTGCCGCGCCGCTACGGACACGCGCAGgtactcggtg ... tcaaccttagTTCCAACAAAGGCGATCGTAAACAGTGATGGCATCCCTGAAACGAGTGATT
EST: CGCGAGTCCCCGCGGCGTTGTCTCTGCCGCGCCGCTACGGACACGCGCAG TTCCAACAAAGGCGATCGTAAACAGTGATGGCATCCCTGAAACGAGTGATTEST: gi|71446386|gb|DR827436.1|DR827436
genomic: CGCGAGTCCCCGCGGCGTTGTCTCTGCCGCGCCGCTACGGACACGCGCAGgtactcggtg ... tcaaccttagTTCCAACAAAGGCGATCGTAAACAGTGATGGCATCCCTGAAACGAGTGATT
EST: CGCGAGTCCCCGCGGCGTTGTCTCTGCCGCGCCGCTACGGACACGCGCAG TTCCAACAAAGGCGATCGTAAACAGTGATGGCATCCCTGAAACGAGTGATT
genomic: CGCGAGTCCCCGCGGCGTTGTCTCTGCCGCGCCGCTACGGACACGCGCAGgtactcggtg ... tcaaccttagTTCCAACAAAGGCGATCGTAAACAGTGATGGCATCCCTGAAACGAGTGATT
tgccaaagcaagaatatctgatttggttcgtgtttgattcaattttcaaccttagTTCCAACAAAGGCGATCGTAAACAGTGATGGCATCCCTGAAACGAGTGATTCTCCACATGTGGTTTGCTTTGGTGAATTGCTAATTGACTTCGTCCCAAC
ttttc CT-rich tract
tttgattcaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcacttagccttttagttaacattttgtcaatttagatgtgatgctgccaaagcaagaatatctgatttggttcgtgtttgattcaattttcaaccttagTTCCAACAAAGGCGATCGTAAACAGTGATGGCATCCCTGAAACGAGTGATTCTCCACATGTGGTTTGCTTTGGTGAATTGCTAATTGACTTCGTCCCAAC
- - - - - - - - - - - - - - - - - - - - gatgctg
- - - - - - - - - - - - - - - - - - - - - - - - caaagcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgatttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgattca