1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...aacgtaacatagacttcatatattgcgtgaattcattatccatcttctttctataattgggatctttgtttgatgtcaaccctgtgattgctctctgcagAGGCCTACGATTCGCTGGATCCAAACGGCAACATCACTATAAAATGGGATATCATGCAGTGGACTCCTGACGGATATGTC
species | Zea mays |
transcript | GRMZM2G071970_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGCCGTGCTGCTCGCGGCCGCGCTGCTCCTCTCCGCACCGACCACCACAG AGGCCTACGATTCGCTGGATCCAAACGGCAACATCACTATAAAATGGGATAEST: gi|29167757|gb|CB411017.1|CB411017
genomic: CGCCGTGCTGCTCGCGGCCGCGCTGCTCCTCTCCGCACCGACCACCACAGgttcggccct ... ctctctgcagAGGCCTACGATTCGCTGGATCCAAACGGCAACATCACTATAAAATGGGATA
EST: CGCCG-GCTGCTCGCGGCCGCGCTGCTCCTCTCCGCACCGACCACCACAG AGGCCTACGATTCGCTGGATCCAAACGGCAACATCACTATAAAATGGGATA
genomic: CGCCGTGCTGCTCGCGGCCGCGCTGCTCCTCTCCGCACCGACCACCACAGgttcggccct ... ctctctgcagAGGCCTACGATTCGCTGGATCCAAACGGCAACATCACTATAAAATGGGATA
tctttctataattgggatctttgtttgatgtcaaccctgtgattgctctctgcagAGGCCTACGATTCGCTGGATCCAAACGGCAACATCACTATAAAATGGGATATCATGCAGTGGACTCCTGACGGATATGTC
gtttgat putative branch site (score: 99)
ttgctctct putative PPT
tataatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aacgtaacatagacttcatatattgcgtgaattcattatccatcttctttctataattgggatctttgtttgatgtcaaccctgtgattgctctctgcagAGGCCTACGATTCGCTGGATCCAAACGGCAACATCACTATAAAATGGGATATCATGCAGTGGACTCCTGACGGATATGTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - ttcatat
- - - - - - - - - - - ttgcgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgatt