1 5' 3' | 2 5' 3' | 3 5' 3' |
...gcaaggatgtttgttgtttacgatttggaattcaccttttgaagaaatgaacttaaggcccatagttgcttacgaatttgagaaaatactacattcgcagGTTCTGTAACGTCAAGACATCTCGAACACCCCCTCCACCGGATCCTGATGAGCCTTCCAATGTTGCTCAAGCTATTGCCTCATGGGGCCTTGAATATATA
species | Zea mays |
transcript | GRMZM2G071714_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCCACCGCCACAATTATGATCCTTGGGGACACCTGCACGCGCGGATGCAG GTTCTGTAACGTCAAGACATCTCGAACACCCCCTCCACCGGATCCTGATGAEST: gi|50333848|gb|CO528974.1|CO528974
genomic: GCCACCGCCACAATTATGATCCTTGGGGACACCTGCACGCGCGGATGCAGgtaagagatt ... acattcgcagGTTCTGTAACGTCAAGACATCTCGAACACCCCCTCCACCGGATCCTGATGA
EST: GCCACCGCCACAATTATGATCCTTGGGGACACCTGCACGCGCGGATGCAG GTTCTGTAACGTCAAGACATCTCGAACACCCCCTCCACCGGATCCTGATGAEST: gi|91872938|gb|EB402895.1|EB402895
genomic: GCCACCGCCACAATTATGATCCTTGGGGACACCTGCACGCGCGGATGCAGgtaagagatt ... acattcgcagGTTCTGTAACGTCAAGACATCTCGAACACCCCCTCCACCGGATCCTGATGA
EST: GCCACCGCCACAATTATGATCCTTGGGGACACCTGCACGCGCGGATGCAG GTTCTGTAACGTCAAGACATCTCGAACACCCCCTCCACCGGATCCTGATGAEST: gi|149103480|gb|EE288873.2|EE288873
genomic: GCCACCGCCACAATTATGATCCTTGGGGACACCTGCACGCGCGGATGCAGgtaagagatt ... acattcgcagGTTCTGTAACGTCAAGACATCTCGAACACCCCCTCCACCGGATCCTGATGA
EST: GCCACCGCCACAATTATGATCCTTGGGGACACCTGCACGCGCGGATGCAG GTTCTGTAACGTCAAGACATCTCGAACACCCCCTCCACCGGATCCTGATGAEST: gi|149083380|gb|EE172687.2|EE172687
genomic: GCCACCGCCACAATTATGATCCTTGGGGACACCTGCACGCGCGGATGCAGgtaagagatt ... acattcgcagGTTCTGTAACGTCAAGACATCTCGAACACCCCCTCCACCGGATCCTGATGA
EST: GCCACCGCCACAATTATGATCCTTGGGGACACCTGCACGCGCGGATGCAG GTTCTGTAACGTCAAGACATCTCGAACACCCCCTCCACCGGATCCTGATGAEST: gi|74244797|gb|DT652711.1|DT652711
genomic: GCCACCGCCACAATTATGATCCTTGGGGACACCTGCACGCGCGGATGCAGgtaagagatt ... acattcgcagGTTCTGTAACGTCAAGACATCTCGAACACCCCCTCCACCGGATCCTGATGA
EST: GCCACCGCCACAATTATGATCCTTGGGGACACCTGCACGCGCGGATGCAG GTTCTGTAACGTCAAGACATCTCGAACACCCCCTCCACCGGATCCTGATGAEST: gi|149110556|gb|EE190481.2|EE190481
genomic: GCCACCGCCACAATTATGATCCTTGGGGACACCTGCACGCGCGGATGCAGgtaagagatt ... acattcgcagGTTCTGTAACGTCAAGACATCTCGAACACCCCCTCCACCGGATCCTGATGA
EST: GCCACCGCCACAATTATGATCCTTGGGGACACCTGCACGCGCGGATGCAG GTTCTGTAACGTCAAGACATCTCGAACACCCCCTCCACCGGATCCTGATGAEST: gi|91051622|gb|EB162040.1|EB162040
genomic: GCCACCGCCACAATTATGATCCTTGGGGACACCTGCACGCGCGGATGCAGgtaagagatt ... acattcgcagGTTCTGTAACGTCAAGACATCTCGAACACCCCCTCCACCGGATCCTGATGA
EST: GCCACCGCCACAATTATGATCCTTGGGGACACCTGCACGCGCGGATGCAG GTTCTGTAACGTCAAGACATCTCGAACACCCCCTCCACCGGATCCTGATGAEST: gi|74238618|gb|DT646532.1|DT646532
genomic: GCCACCGCCACAATTATGATCCTTGGGGACACCTGCACGCGCGGATGCAGgtaagagatt ... acattcgcagGTTCTGTAACGTCAAGACATCTCGAACACCCCCTCCACCGGATCCTGATGA
EST: GCCACCGCCACAATTATGATCCTTGGGGACACCTGCACGCGCGGATGCAG GTTCTGTAACGTCAAGACATCTCGAACACCCCCTCCACCGGATCCTGATGAEST: gi|93281869|gb|EB674133.1|EB674133
genomic: GCCACCGCCACAATTATGATCCTTGGGGACACCTGCACGCGCGGATGCAGgtaagagatt ... acattcgcagGTTCTGTAACGTCAAGACATCTCGAACACCCCCTCCACCGGATCCTGATGA
EST: GCCACCGCCACAATTATGATCCTTGGGGACACCTGCACGCGCGGATGCAG GTTCTGTAACGTCAAGACATCTCGAACACCCCCTCCACCGGATCCTGATGAEST: gi|78115617|gb|DV534005.1|DV534005
genomic: GCCACCGCCACAATTATGATCCTTGGGGACACCTGCACGCGCGGATGCAGgtaagagatt ... acattcgcagGTTCTGTAACGTCAAGACATCTCGAACACCCCCTCCACCGGATCCTGATGA
EST: GCCACCGCCACAATTATGATCCTTGGGGACACCTGCACGCGCGGATGCAG GTTCTGTAACGTCAAGACATCTCGAACACCCCCTCCACCGGATCCTGATGAEST: gi|86466056|gb|DY232429.1|DY232429
genomic: GCCACCGCCACAATTATGATCCTTGGGGACACCTGCACGCGCGGATGCAGgtaagagatt ... acattcgcagGTTCTGTAACGTCAAGACATCTCGAACACCCCCTCCACCGGATCCTGATGA
EST: GCCACCGCCACAATTATGATCCTTGGGGACACCTGCACGCGCGGATGCAG GTTCTGTAACGTCAAGACATCTCGAACACCCCCTCCACCGGATCCTGATGAEST: gi|148939280|gb|EC883774.2|EC883774
genomic: GCCACCGCCACAATTATGATCCTTGGGGACACCTGCACGCGCGGATGCAGgtaagagatt ... acattcgcagGTTCTGTAACGTCAAGACATCTCGAACACCCCCTCCACCGGATCCTGATGA
EST: GCCACCGCCACAATTATGATCCTTGGGGACACCTGCACGCGCGGATGCAG GTTCTGTAACGTCAAGACATCTCGAACACCCCCTCCACCGGATCCTGATGAEST: gi|71313820|gb|DR793501.1|DR793501
genomic: GCCACCGCCACAATTATGATCCTTGGGGACACCTGCACGCGCGGATGCAGgtaagagatt ... acattcgcagGTTCTGTAACGTCAAGACATCTCGAACACCCCCTCCACCGGATCCTGATGA
EST: GCCACCGCCACAATTATGATCCTTGGGGACACCTGCACGCGCGGATGCAG GTTCTGTAACGTCAAGACATCTCGAACACCCCCTCCACCGGATCCTGATGAEST: gi|149110880|gb|EE294378.2|EE294378
genomic: GCCACCGCCACAATTATGATCCTTGGGGACACCTGCACGCGCGGATGCAGgtaagagatt ... acattcgcagGTTCTGTAACGTCAAGACATCTCGAACACCCCCTCCACCGGATCCTGATGA
EST: GCCACCGCCACAATTATGATCCTTGGGGACACCTGCACGCGCGGATGCAG GTTCTGTAACGTCAAGACATCTCGAACACCCCCTCCACCGGATCCTGATGAEST: gi|91875685|gb|EB405642.1|EB405642
genomic: GCCACCGCCACAATTATGATCCTTGGGGACACCTGCACGCGCGGATGCAGgtaagagatt ... acattcgcagGTTCTGTAACGTCAAGACATCTCGAACACCCCCTCCACCGGATCCTGATGA
EST: GCCACCGCCACAATTATGATCCTTGGGGACACCTGCACGCGCGGATGCAG GTTCTGTAACGTCAAGACATCTCGAACACCCCCTCCACCGGATCCTGATGAEST: gi|71300477|gb|DR786296.1|DR786296
genomic: GCCACCGCCACAATTATGATCCTTGGGGACACCTGCACGCGCGGATGCAGgtaagagatt ... acattcgcagGTTCTGTAACGTCAAGACATCTCGAACACCCCCTCCACCGGATCCTGATGA
EST: GCCACCGCCACAATTATGATCCTTGGGGACACCTGCACGCGCGGATGCAG GTTCTGTAACGTCAAGACATCTCGAACACCCCCTCCACCGGATCCTGATGAEST: gi|71307737|gb|DR790087.1|DR790087
genomic: GCCACCGCCACAATTATGATCCTTGGGGACACCTGCACGCGCGGATGCAGgtaagagatt ... acattcgcagGTTCTGTAACGTCAAGACATCTCGAACACCCCCTCCACCGGATCCTGATGA
EST: GCCACCGCCACAATTATGATCCTTGGGGACACCTGCACGCGCGGATGCAG GTTCTGTAACGTCAAGACATCTCGAACACCCCCTCCACCGGATCCTGATGAEST: gi|74244354|gb|DT652268.1|DT652268
genomic: GCCACCGCCACAATTATGATCCTTGGGGACACCTGCACGCGCGGATGCAGgtaagagatt ... acattcgcagGTTCTGTAACGTCAAGACATCTCGAACACCCCCTCCACCGGATCCTGATGA
EST: GCCACCGCCACAATTATGATCCTTGGGGACACCTGCACGCGCGGATGCAG GTTCTGTAACGTCAAGACATCTCGAACACCCCCTCCACCGGATCCTGATGA
genomic: GCCACCGCCACAATTATGATCCTTGGGGACACCTGCACGCGCGGATGCAGgtaagagatt ... acattcgcagGTTCTGTAACGTCAAGACATCTCGAACACCCCCTCCACCGGATCCTGATGA
aatgaacttaaggcccatagttgcttacgaatttgagaaaatactacattcgcagGTTCTGTAACGTCAAGACATCTCGAACACCCCCTCCACCGGATCCTGATGAGCCTTCCAATGTTGCTCAAGCTATTGCCTCATGGGGCCTTGAATATATA
tgcttac putative branch site (score: 85)
aatttgagaaaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcaaggatgtttgttgtttacgatttggaattcaccttttgaagaaatgaacttaaggcccatagttgcttacgaatttgagaaaatactacattcgcagGTTCTGTAACGTCAAGACATCTCGAACACCCCCTCCACCGGATCCTGATGAGCCTTCCAATGTTGCTCAAGCTATTGCCTCATGGGGCCTTGAATATATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - -tgtttgt
- - - - - - - - - - - - - - - - - - - - gaagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcttac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaaatac