1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...accgctccatacactggcttttgttgtgcctgccgggtggaacctcgctggtctggtcgcatatcacctcacttacgattcatcacttcgctctctgcagTGCAAGCTCTGGGTTCCCGGATCCGATACCACCGGCCTCTCGGCGAGTGTGTAATCCAGCGAGCGAGCGCTCGGTTTTAGCCGTGAGAGCGGGAGATGAG
species | Zea mays |
transcript | GRMZM2G071378_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCGGAGGAGGAGCAACGCGGGCGCGGAGAGGCCCGCCAGCGAAGGCGCAG TGCAAGCTCTGGGTTCCCGGATCCGATACCACCGGCCTCTCGGCGAGTGTGEST: gi|211324156|gb|FL195972.1|FL195972
genomic: CCGGAGGAGGAGCAACGCGGGCGCGGAGAGGCCCGCCAGCGAAGGCGCAGgtaaccgcaa ... ctctctgcagTGCAAGCTCTGGGTTCCCGGATCCGATACCACCGGCCTCTCGGCGAGTGTG
EST: CCGGAGGAGGAGCAACGCGGGCGCGGAGAGGCCCGCCAGCGAAGGCGCAG TGCAAGCTCTGGGTTCCCGGATCCGATACCACCGGCCTCTCGGCGAGTGTGEST: gi|149076589|gb|EE165223.2|EE165223
genomic: CCGGAGGAGGAGCAACGCGGGCGCGGAGAGGCCCGCCAGCGAAGGCGCAGgtaaccgcaa ... ctctctgcagTGCAAGCTCTGGGTTCCCGGATCCGATACCACCGGCCTCTCGGCGAGTGTG
EST: CCGGAGGAGGAGCAACGCGGGCGCGGAGAGGCCCGCCAGCGAAGGCGCAG TGCAAGCTCTGGGTTCCCGGATCCGATACCACCGGCCTCTCGGCGAGTGTGEST: gi|211324149|gb|FL195965.1|FL195965
genomic: CCGGAGGAGGAGCAACGCGGGCGCGGAGAGGCCCGCCAGCGAAGGCGCAGgtaaccgcaa ... ctctctgcagTGCAAGCTCTGGGTTCCCGGATCCGATACCACCGGCCTCTCGGCGAGTGTG
EST: CCGGAGGAGGAGCAACGCGGGCGCGGAGAGGCCCGCCAGCGAAGGCGCAG TGCAAGCTCTGGGTTCCCGGATCCGATACCACCGGTCTCTCGGCGAGTGTGEST: gi|148931458|gb|EC874447.2|EC874447
genomic: CCGGAGGAGGAGCAACGCGGGCGCGGAGAGGCCCGCCAGCGAAGGCGCAGgtaaccgcaa ... ctctctgcagTGCAAGCTCTGGGTTCCCGGATCCGATACCACCGGCCTCTCGGCGAGTGTG
EST: CCGGAGGAGGAGCAACGCGGGCGCGGAGAGGCCCGCCAGCGAAGGCGCAG TGCAAGCTCTGGGTTCCCGGATCCGATACCACCGGCCTCTCGGCGAGTGTGEST: gi|211324154|gb|FL195970.1|FL195970
genomic: CCGGAGGAGGAGCAACGCGGGCGCGGAGAGGCCCGCCAGCGAAGGCGCAGgtaaccgcaa ... ctctctgcagTGCAAGCTCTGGGTTCCCGGATCCGATACCACCGGCCTCTCGGCGAGTGTG
EST: CCGGAGGAGGAGCAACGCGGGCGCGGAGAGGCCCGCCAGCGAAGGCGCAG TGCAAGCTCTGGGTTCCCGGATCCGATACCACCGGTCTCTCGGCGAGTGTGEST: gi|211324155|gb|FL195971.1|FL195971
genomic: CCGGAGGAGGAGCAACGCGGGCGCGGAGAGGCCCGCCAGCGAAGGCGCAGgtaaccgcaa ... ctctctgcagTGCAAGCTCTGGGTTCCCGGATCCGATACCACCGGCCTCTCGGCGAGTGTG
EST: CCGGAGGAGGAGCAACGCGGGCGCGGAGAGGCCCGCCAGCGAAGGCGCAG TGCAAGCTCTGGGTTCCCGGATCCGATACCACCGGCCTCTCGGCGAGTGTGEST: gi|149078292|gb|EE167056.2|EE167056
genomic: CCGGAGGAGGAGCAACGCGGGCGCGGAGAGGCCCGCCAGCGAAGGCGCAGgtaaccgcaa ... ctctctgcagTGCAAGCTCTGGGTTCCCGGATCCGATACCACCGGCCTCTCGGCGAGTGTG
EST: CCGGAGGAGGAGCAACGCGGGCGCGGAGAGGCCCGCCAGCGAAGGCGCAG TGCAAGCTCTGGGTTCCCGGATCCGATACCACCGGCCTCTCGGCGAGTGTGEST: gi|211324147|gb|FL195963.1|FL195963
genomic: CCGGAGGAGGAGCAACGCGGGCGCGGAGAGGCCCGCCAGCGAAGGCGCAGgtaaccgcaa ... ctctctgcagTGCAAGCTCTGGGTTCCCGGATCCGATACCACCGGCCTCTCGGCGAGTGTG
EST: CCGGAGGAGGAGCAACGCGGGCGCGGAGAGGCCCGCCAGCGAAGGCGCAG TGCAAGCTCTGGGTTCCCGGATCCGATACCACCGGCCTCTCGGCGAGTGTGEST: gi|211324153|gb|FL195969.1|FL195969
genomic: CCGGAGGAGGAGCAACGCGGGCGCGGAGAGGCCCGCCAGCGAAGGCGCAGgtaaccgcaa ... ctctctgcagTGCAAGCTCTGGGTTCCCGGATCCGATACCACCGGCCTCTCGGCGAGTGTG
EST: CCGGAGGAGGAGCAACGCGGGCGCGGAGAGGCCCGCCAGCGAAGGCGCAG TGCAAGCTCTGGGTTCCCGGATCCGATACCACCGGCCTCTCGGCGAGTGTGEST: gi|148968976|gb|EE019670.2|EE019670
genomic: CCGGAGGAGGAGCAACGCGGGCGCGGAGAGGCCCGCCAGCGAAGGCGCAGgtaaccgcaa ... ctctctgcagTGCAAGCTCTGGGTTCCCGGATCCGATACCACCGGCCTCTCGGCGAGTGTG
EST: CCGGAGGAGGAGCAACGCGGGCGCGGAGAGGCCCGCCAGCGAAGGCGCAG TGCAAGCTCTGGGTTCCCGGATCCGATACCACCGGCCTCTCGGCGAGTGTGEST: gi|211324145|gb|FL195961.1|FL195961
genomic: CCGGAGGAGGAGCAACGCGGGCGCGGAGAGGCCCGCCAGCGAAGGCGCAGgtaaccgcaa ... ctctctgcagTGCAAGCTCTGGGTTCCCGGATCCGATACCACCGGCCTCTCGGCGAGTGTG
EST: CCGGAGGAGGAGCAACGCGGGCGCGGAGAGGCCCGCCAGCGAAGGCGCAG TGCAAGCTCTGGGTTCCCGGATCCGATACCACCGGCCTCTCGGCGAGTGTGEST: gi|211324144|gb|FL195960.1|FL195960
genomic: CCGGAGGAGGAGCAACGCGGGCGCGGAGAGGCCCGCCAGCGAAGGCGCAGgtaaccgcaa ... ctctctgcagTGCAAGCTCTGGGTTCCCGGATCCGATACCACCGGCCTCTCGGCGAGTGTG
EST: CCGGAGGAGGAGCAACGCGGGCGCGGAGAGGCCCGCCAGCGAAGGCGCAG TGCAAGCTCTGGGTTCCCGGATCCGATACCACCGGTCTCTCGGCGAGTGTGEST: gi|67041554|gb|CO467809.1|CO467809
genomic: CCGGAGGAGGAGCAACGCGGGCGCGGAGAGGCCCGCCAGCGAAGGCGCAGgtaaccgcaa ... ctctctgcagTGCAAGCTCTGGGTTCCCGGATCCGATACCACCGGCCTCTCGGCGAGTGTG
EST: CCGGAGGAGGAGCAACGCGGGCGCGGAGAGGCCCGCCAGCGAAGGCGCAG TGCAAGCTCTGGGTTCCCGGATCCGATACCACCGGTCTCTCGGCGAGTGTGEST: gi|76282823|gb|DV022391.1|DV022391
genomic: CCGGAGGAGGAGCAACGCGGGCGCGGAGAGGCCCGCCAGCGAAGGCGCAGgtaaccgcaa ... ctctctgcagTGCAAGCTCTGGGTTCCCGGATCCGATACCACCGGCCTCTCGGCGAGTGTG
EST: CCGGAGGAGGAGCAACGCGGGCGCGGAGAGGCCCGCCAGCGAAGGCGCAG TGCAAGCTCTGGGTTCCCGGATCCGATACCACCGGCCTCTCGGCGAGTGTGEST: gi|211324143|gb|FL195959.1|FL195959
genomic: CCGGAGGAGGAGCAACGCGGGCGCGGAGAGGCCCGCCAGCGAAGGCGCAGgtaaccgcaa ... ctctctgcagTGCAAGCTCTGGGTTCCCGGATCCGATACCACCGGCCTCTCGGCGAGTGTG
EST: CCGGAGGAGGAGCAACGCGGGCGCGGAGAGGCCCGCCAGCGAAGGCGCAG TGCAAGCTCTGGGTTCCCGGATCCGATACCACCGGTCTCTCGGCGAGTGTGEST: gi|211324157|gb|FL195973.1|FL195973
genomic: CCGGAGGAGGAGCAACGCGGGCGCGGAGAGGCCCGCCAGCGAAGGCGCAGgtaaccgcaa ... ctctctgcagTGCAAGCTCTGGGTTCCCGGATCCGATACCACCGGCCTCTCGGCGAGTGTG
EST: CCGGAGGAGGAGCAACGCGGGCGCGGAGAGGCCCGCCAGCGAAGGCGCAG TGCAAGCTCTGGGTTCCCGGATCCGATACCACCGGTCTCTCGGCGAGTGTGEST: gi|211321984|gb|FL195958.1|FL195958
genomic: CCGGAGGAGGAGCAACGCGGGCGCGGAGAGGCCCGCCAGCGAAGGCGCAGgtaaccgcaa ... ctctctgcagTGCAAGCTCTGGGTTCCCGGATCCGATACCACCGGCCTCTCGGCGAGTGTG
EST: CCGGAGGAGGAGCAACGCGGGCGCGGAGAGGCCCGCCAGCGAAGGCGCAG TGCAAGCTCTGGGTTCCCGGATCCGATACCACCGGTCTCTCGGCGAGTGTGEST: gi|71446961|gb|DR828011.1|DR828011
genomic: CCGGAGGAGGAGCAACGCGGGCGCGGAGAGGCCCGCCAGCGAAGGCGCAGgtaaccgcaa ... ctctctgcagTGCAAGCTCTGGGTTCCCGGATCCGATACCACCGGCCTCTCGGCGAGTGTG
EST: CCGGAGGAGGAGCAACGCGGGCGCGGAGAGGCCCGCCAGCGAAGGCGCAG TGCAAGCTCTGGGTTCCCGGATCCGATACCACCGGCCTCTCGGCGAGTGTG
genomic: CCGGAGGAGGAGCAACGCGGGCGCGGAGAGGCCCGCCAGCGAAGGCGCAGgtaaccgcaa ... ctctctgcagTGCAAGCTCTGGGTTCCCGGATCCGATACCACCGGCCTCTCGGCGAGTGTG
cgctggtctggtcgcatatcacctcacttacgattcatcacttcgctctctgcagTGCAAGCTCTGGGTTCCCGGATCCGATACCACCGGCCTCTCGGCGAGTGTGTAATCCAGCGAGCGAGCGCTCGGTTTTAGCCGTGAGAGCGGGAGATGAG
cacttac putative branch site (score: 2)
tcacttcgctctct putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| accgctccatacactggcttttgttgtgcctgccgggtggaacctcgctggtctggtcgcatatcacctcacttacgattcatcacttcgctctctgcagTGCAAGCTCTGGGTTCCCGGATCCGATACCACCGGCCTCTCGGCGAGTGTGTAATCCAGCGAGCGAGCGCTCGGTTTTAGCCGTGAGAGCGGGAGATGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - -catacac
- - - - - - - - - -tttgttg
- - - - - - - - - - - - - tgcctgc
- - - - - - - - - - - - - - - - - - - - - - - gctggtc