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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttagttcctgtttttgtaaaatataatattgaattagtagagtactagtagaattcattgcattacctgcttgtgtaactgacaaatgataaaaatgcagTTCCCCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCATTGGTGATGGAACAGTGAGCTATGGAATGGATGATGCCGATGACATCTA

Basic information

species Zea mays
transcript GRMZM2G071010_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G071010_T03 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA10G09280.2 (Glycine max), 3'ss of exon 1
---ttagt-tcctgtttttgtaaaatataatattgaattagtagagtactagtagaattcattgcattacctgcttgtgtaactgacaaatgataaaaatgcagTTCCCCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCATTGGTGATGGAACAGTGAGCTATGGAATGGATGATGCCGATGACATCTA
   | | | |    |   |  |    | |||    | |||  |  ||  || |  |||  |     ||   |  ||||  ||       ||| ||||  |||||||||  | ||||||||  |  | |||||||| || |||||||| || || ||||| ||||| ||||| |||||||||||||||||||  |||||||| ||
ttatcaatatgtcatgcattgatcccacaatggctagtta-cattgtgttattcaaataaaaaagtttgtgt-tttgttaaatatttgtatgttaaa--tgcagTTCCTAGGAACTTCAGATTGCTGGAGGAGCTTGAACGTGGAGAAAAAGGAATTGGAGATGGCACAGTTAGCTATGGAATGGATGATGGTGATGACATTTA

upper sequence: GRMZM2G071010_T03 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA02G35990.1 (Glycine max), 3'ss of exon 1
ttagttcctgtttttgtaaa---atataatattgaattagtagagtactagtagaattcattgcattacctgcttgtgtaactgacaaatgataaaaatgcagTTCCCCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCATTGGTGATGGAACAGTGAGCTATGGAATGGATGATGCCGATGACATCTA
 ||| |  | || |  | ||   ||   | | ||   ||||    |  |   | |||  |     ||       |||  ||       ||| | ||| |||||||||  | ||||||||  |  | |||||||| || ||||| || || || ||||| ||||| ||||| |||||||||||||||||||  |||||||| ||
gtagatattcttgtcatgaattgatcccacaatgg-ctagttacatgttttca-aataaaaaatgtttgtgttctgttaaatatttgtatgtttaaa-tgcagTTCCTAGGAACTTCAGATTGCTGGAGGAGCTTGAACGTGGTGAAAAAGGAATTGGAGATGGCACAGTTAGCTATGGAATGGATGATGGTGATGACATTTA

upper sequence: GRMZM2G071010_T03 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA03G35790.1 (Glycine max), 3'ss of exon 1
ttagttcctgtttttgtaaaatataatattgaattagtagag-tactagtagaattcattgcattacc-tgcttgtgtaactga---caaatg-ataaaaatgcagTTCCCCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCATTGGTGATGGAACAGTGAGCTATGGAATGGATGATGCCGATGACATCTA
        | |  ||| |  ||   ||||  |   | |   | || |  | |||   |     ||| | ||  | ||||  | |   ||  || |    |||||||||||  | ||||||||  |  | |||||||| |||   ||||| || || || || ||||||||||| |||||||||||||||||||  || ||||| ||
------aatttggttgaaggattacatatgtagccattcttgatatttattgaagatacaatgttagcatgagtatgtagttaaaggcatttgtactttaatgcagTTCCAAGGAACTTCAGATTGCTGGAGGAGCTTGAGAAGGGAGAAAAAGGAATCGGAGATGGAACAGTTAGCTATGGAATGGATGATGGTGACGACATTTA

upper sequence: GRMZM2G071010_T03 (Zea mays), 3'ss of exon 1
lower sequence: AT3G52560.4 (Arabidopsis thaliana), 3'ss of exon 1
ttagttcctgtttttgtaaaatataatattgaattagtagagtactagtaga-attcattg-cattacctgcttgtgtaactgacaaatgataaaaatgcagTTCCCCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCATTGGTGATGGAACAGTGAGCTATGGAATGGATGATGCCGATGACATCTA
 ||     |||| |  |      |   ||| ||  |   || | || ||    ||| | ||  || |  || || ||| ||   |   | ||   |||  ||||||  | || ||  || | || |||||||| || ||||| ||||| || ||||| |||||||| ||||||||||||||||||||||  |||||||||||
atatgatatgttctgttctctgctttgattaaaaaaagtgattgcttgttttcatttactgatatgaattgtttttgttac--gcttgttattgcaatatagTTCCGAGGAATTTTCGGTTGTTGGAGGAGCTTGAACGTGGGGAGAAAGGTATTGGGGATGGAACTGTGAGCTATGGAATGGATGATGGAGATGACATCTA

upper sequence: GRMZM2G071010_T03 (Zea mays), 3'ss of exon 1
lower sequence: AT2G36060.3 (Arabidopsis thaliana), 3'ss of exon 1
ttagttcctgtttttgtaaaatataatattgaattagtagagtactagtagaattcattgcattacctgcttgtgtaactgacaaatgataaaaatgca--gTTCCCCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCATTGGTGATGGAACAGTGAGCTATGGAATGGATGATGCCGATGACATCTA
 ||| |  | ||   |   | |    |  | |     |||||   || | |  ||  || | ||  ||     |  | |||    ||| |   |||| |  |||||  | || ||| || |  | |||||||| || ||||||||||| || ||||| |||||||| ||||||||||||||||||||||  |||||||| ||
-tagattgttttcaagctcagtgctttgcttagaatatagagc-ttatttgtgttagtttccttcactaaaaattgagctgtttgatgttgttaatgtaaagTTCCGAGGAATTTCCGGTTGCTGGAGGAGCTTGAACGTGGAGAGAAAGGTATTGGAGATGGAACTGTGAGCTATGGAATGGATGATGGAGATGACATTTA

upper sequence: GRMZM2G071010_T03 (Zea mays), 3'ss of exon 1
lower sequence: Vv06s0080g01080.t01 (Vitis vinifera), 3'ss of exon 1
ttagttcctgtttttgtaaaatataatattgaatt---agtagagtactagtagaattcattgcattacctgcttgtgtaactgacaaatgataaaaatgcagTTCCCCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCATTGGTGATGGAACAGTGAGCTATGGAATGGATGATGCCGATGACATCTA
  |   |  |  || | ||    |  |||    |    |||  |    |  |||| |  |    |  |  |   |||||   || |      | |   |||||| || || ||||||||  |  | ||||| || || ||||| |||||||| ||||| ||||| || ||||| ||||||||||||||||  |||||||| ||
--acaactggagttggaaatgcttggtatcttgtctcaagtgaaactatcttaga-tggaagttacaaggtatgtgtgtttttgtctttatgttatcttgcagTCCCTCGCAACTTCAGATTGCTGGAGGAACTTGAACGTGGGGAGAAGGGTATTGGAGATGGTACTGTGAGTTATGGAATGGATGATGGAGATGACATATA

upper sequence: GRMZM2G071010_T03 (Zea mays), 3'ss of exon 1
lower sequence: Vv08s0007g02580.t01 (Vitis vinifera), 3'ss of exon 1
-----ttagttcctgtttttgtaaaatataatattgaattagtagagtactagtagaattcattgcattacctgcttgtgtaactgacaaatgataaaaatgcagTTCCCCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCATTGGTGATGGAACAGTGAGCTATGGAATGGATGATGCCGATGACATCTA
     | |      |  ||||  |  ||         |||   | | |  || ||   ||||  |  || |   ||| |    ||    | |   |    |||||| || |||||||||||  |  | ||||| || || |||||||| ||||| ||||| ||||| || || |||||||||||||||||||  |||||||| ||
tggtctgaagcttagcctttgatatttaaggcgccttattcagacaattttattaattttcaa-gatttgcgcacttttaagtctctgcatttcca----tgcagTCCCTCGAAACTTCAGATTGCTTGAGGAACTTGAACGTGGAGAAAAGGGTATTGGAGATGGTACTGTCAGCTATGGAATGGATGATGGAGATGACATTTA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|89756017|gb|DY686217.1|DY686217
EST:     TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCG                         TTCCCCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
genomic: TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCGgtaagtaacc ... aaaaatgcagTTCCCCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
EST: gi|211058482|gb|FL105767.1|FL105767
EST:     TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCG                         TTCCCCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
genomic: TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCGgtaagtaacc ... aaaaatgcagTTCCCCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
EST: gi|211049579|gb|FL105709.1|FL105709
EST:     TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCG                         TTCCCCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
genomic: TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCGgtaagtaacc ... aaaaatgcagTTCCCCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
EST: gi|32923039|gb|CF027851.1|CF027851
EST:     TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCG                         TTCCCCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
genomic: TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCGgtaagtaacc ... aaaaatgcagTTCCCCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
EST: gi|33095289|gb|CF055283.1|CF055283
EST:     TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCG                         TTCCCCGAAACTTCAGGCTATTATTGGAGCTCGAGCGTGGAGAGAAGGGCA
genomic: TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCGgtaagtaacc ... aaaaatgcagTTCCCCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
EST: gi|211432640|gb|FL105621.1|FL105621
EST:     TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCG                         TTCCCCGAAACTTCAGGCTATTAGAGGAGCTCGAGCKTGGAGAGAAGGGCA
genomic: TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCGgtaagtaacc ... aaaaatgcagTTCCCCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
EST: gi|9733380|gb|BE512237.1|BE512237
EST:     TGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCG                         TTCCCCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
genomic: TGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCGgtaagtaacc ... aaaaatgcagTTCCCCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
EST: gi|211058470|gb|FL105755.1|FL105755
EST:     TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCG                         TTCCCCGAAACTTCAGGCTATTAGAGGAGCTCGASCGTGGAGAGAAGGGCA
genomic: TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCGgtaagtaacc ... aaaaatgcagTTCCCCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
EST: gi|211049587|gb|FL105717.1|FL105717
EST:     TCCAGGKGCGATGACGCTGGGTAGCTCCGGCGCCKGATCGAGCGTCGTCG                         TTCCCCGAAACTTCAGGCTATTAGAGGAGCTCGAGCNTGGAGAGAAGGGCA
genomic: TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCGgtaagtaacc ... aaaaatgcagTTCCCCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
EST: gi|211435244|gb|FL105634.1|FL105634
EST:     TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCG                         TTCCCCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
genomic: TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCGgtaagtaacc ... aaaaatgcagTTCCCCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
EST: gi|211040687|gb|FL105663.1|FL105663
EST:     TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCG                         TTCCCCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTG
genomic: TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCGgtaagtaacc ... aaaaatgcagTTCCCCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTG
EST: gi|211435250|gb|FL105640.1|FL105640
EST:     CCAGGGGCGATGACGCTGGGTAGCTCCGTGCGCCGGATCGAGCGTCGTCG                         TTCCCCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
genomic: CCAGGGGCGATGACGCTGGGTAGCTCCG-GCGCCGGATCGAGCGTCGTCGgtaagtaacc ... aaaaatgcagTTCCCCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
EST: gi|15554192|gb|BI644190.1|BI644190
EST:     TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCG                         TTCCCCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
genomic: TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCGgtaagtaacc ... aaaaatgcagTTCCCCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
EST: gi|211430043|gb|FL105610.1|FL105610
EST:     TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCG                         TTCCCCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
genomic: TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCGgtaagtaacc ... aaaaatgcagTTCCCCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
EST: gi|211432637|gb|FL105618.1|FL105618
EST:     TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCG                         TTCCCCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
genomic: TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCGgtaagtaacc ... aaaaatgcagTTCCCCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
EST: gi|211043657|gb|FL105681.1|FL105681
EST:     TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCG                         TTCCCCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGTGC
genomic: TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCGgtaagtaacc ... aaaaatgcagTTCCCCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGG-GC
EST: gi|213192471|gb|FM190893.1|FM190893
EST:     TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCG                         TTCCCCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
genomic: TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCGgtaagtaacc ... aaaaatgcagTTCCCCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
EST: gi|211055493|gb|FL105750.1|FL105750
EST:     TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCG                         TTCCCCGAAACTTCAGGCTATTA
genomic: TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCGgtaagtaacc ... aaaaatgcagTTCCCCGAAACTTCAGGCTATTA
EST: gi|211052550|gb|FL105735.1|FL105735
EST:     TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCG                         TTCCCCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
genomic: TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCGgtaagtaacc ... aaaaatgcagTTCCCCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
EST: gi|211052549|gb|FL105734.1|FL105734
EST:     TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCG                         TTCCCCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
genomic: TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCGgtaagtaacc ... aaaaatgcagTTCCCCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
EST: gi|32857652|gb|CD997333.1|CD997333
EST:     GACGCTGGGTAGCTCCGGGGCCGGGTCGAGCGTGGTCG                         TTCCCCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
genomic: GACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCGgtaagtaacc ... aaaaatgcagTTCCCCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
EST: gi|211061440|gb|FL105771.1|FL105771
EST:     TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCG                         TTCCCCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
genomic: TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCGgtaagtaacc ... aaaaatgcagTTCCCCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
EST: gi|211435255|gb|FL105645.1|FL105645
EST:     TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCG                         TTCCCCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
genomic: TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCGgtaagtaacc ... aaaaatgcagTTCCCCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
EST: gi|111433965|gb|EE298001.1|EE298001
EST:     TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCG                         TTCCCCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
genomic: TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCGgtaagtaacc ... aaaaatgcagTTCCCCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
EST: gi|67042401|gb|CO468656.1|CO468656
EST:     TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCG                         TTCCCCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
genomic: TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCGgtaagtaacc ... aaaaatgcagTTCCCCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
EST: gi|211058481|gb|FL105766.1|FL105766
EST:     TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCG                         TTCCCCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
genomic: TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCGgtaagtaacc ... aaaaatgcagTTCCCCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
EST: gi|32929652|gb|CF034464.1|CF034464
EST:     TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCG                         TTCCCCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
genomic: TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCGgtaagtaacc ... aaaaatgcagTTCCCCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
EST: gi|9733381|gb|BE512238.1|BE512238
EST:     CAGGGGCGATGACNGCTGGGTAAGCTCCGGCGCCGGATCGAGCGTCGTCG                         TTCCCCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
genomic: CAGGGGCGATGAC-GCTGGGT-AGCTCCGGCGCCGGATCGAGCGTCGTCGgtaagtaacc ... aaaaatgcagTTCCCCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
EST: gi|116829440|gb|EC867966.1|EC867966
EST:     TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCG                         TTCCCCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
genomic: TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCGgtaagtaacc ... aaaaatgcagTTCCCCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
EST: gi|211043655|gb|FL105679.1|FL105679
EST:     TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCG                         TTCCCCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
genomic: TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCGgtaagtaacc ... aaaaatgcagTTCCCCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
EST: gi|32864479|gb|CF004161.1|CF004161
EST:     TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCG                         TTCCCCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
genomic: TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCGgtaagtaacc ... aaaaatgcagTTCCCCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
EST: gi|33104245|gb|CF064205.1|CF064205
EST:     TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCGG                         TTCCCCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGC
genomic: TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTC-Ggtaagtaacc ... aaaaatgcagTTCCCCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGC
EST: gi|211058480|gb|FL105765.1|FL105765
EST:     TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCG                         TTCCCCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
genomic: TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCGgtaagtaacc ... aaaaatgcagTTCCCCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
EST: gi|32851339|gb|CD991020.1|CD991020
EST:     TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCG                         TTCCCCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
genomic: TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCGgtaagtaacc ... aaaaatgcagTTCCCCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
EST: gi|211046627|gb|FL105703.1|FL105703
EST:     TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCG                         TTCCCCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
genomic: TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCGgtaagtaacc ... aaaaatgcagTTCCCCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
EST: gi|211437849|gb|FL105658.1|FL105658
EST:     TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCG                         TTCCCCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
genomic: TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCGgtaagtaacc ... aaaaatgcagTTCCCCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
EST: gi|211437842|gb|FL105651.1|FL105651
EST:     TCCAGGGGCGATSACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCG                         TTCCCCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA
genomic: TCCAGGGGCGATGACGCTGGGTAGCTCCGGCGCCGGATCGAGCGTCGTCGgtaagtaacc ... aaaaatgcagTTCCCCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagtagaattcattgcattacctgcttgtgtaactgacaaatgataaaaatgcagTTCCCCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCATTGGTGATGGAACAGTGAGCTATGGAATGGATGATGCCGATGACATCTA
                               aactgac  putative branch site (score: 2)
                                    acaaatgataaaaat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ttagttcctgtttttgtaaaatataatattgaattagtagagtactagtagaattcattgcattacctgcttgtgtaactgacaaatgataaaaatgcagTTCCCCGAAACTTCAGGCTATTAGAGGAGCTCGAGCGTGGAGAGAAGGGCATTGGTGATGGAACAGTGAGCTATGGAATGGATGATGCCGATGACATCTA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- -gttcctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgcatt