ERISdb: a Database of Plant Splice Sites

General
Orthologs
EST
RNA-Seq
PPT, BS, UA-tract
cis-regulatory elements

Sequence

atgc intronic sequence ATGC exonic sequence

...tgtgtataggaattaattggaaggattagaagagttggagttcttttatgagcagggacataatgtgctaaggggatttcgcttgcttttggcatttcagGGTCCCTTGTAGAGCTGGCACATGCACAACTCCTATTCAAGTAACATCATCTCAGTTGGTCTCAAATGATATATTCCCAGCAGCTGTTGTGAAGGCCATG

Basic information

species	Zea mays
transcript	GRMZM2G070890_T01
intron #	1
splice site	3'
intron type	U2

Orthologous splice sites

atgc intronic sequence ATGC exonic sequence

upper sequence: GRMZM2G070890_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os01g37480.1 (Oryza sativa), 3'ss of exon 1

tgtgtataggaattaattggaaggattagaagagttgga-gttcttttatgagcagggacataa-tgtgctaaggggatttcgcttgc----ttttggcatttcagGGTCCCTTGTAGAGCTGGCACATGCACAACTCCTATTCAAGTAACATCATCTCAGTTGGTCTCAAATGATATATTCCCAGCAGCTGTTGTGAAGGCCATG
     ||| |  |  |||      | || || | ||||| || ||||| |||| |||   |||| | | |||||  ||||  |||| |    || || ||||||||||||||||||||||| |||||||||||||| || |||||||| ||||| || ||||||||||||||||| ||||||||| || |||||||||| ||| | 
-----ataagg-tcgattttggaaactaaaatacttggaagtacttttctgagtaggacgataaatatactaagtagattctgcttaccttcttctgccatttcagGGTCCCTTGTAGAGCAGGCACATGCACAACGCCCATTCAAGTTACATCTTCGCAGTTGGTCTCAAATGAGATATTCCCACCATCTGTTGTGAAAGCCCTT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments

ATGC    EST sequence
ATGC    genomic sequence (exon)
ATGC    genomic sequence (truncated intron)

EST: gi|211221834|gb|FK951149.1|FK951149

EST:     GCCTCCCGAGTCTACTTCCTCCTCATCATGCTCCAGATCCCGCTCTTCAG                         GGTCCCTTGTAGAGCTGGCACATGCACAACTCCTATTCAAGTAACATCATC
genomic: GCCTCCCGAGTCTACTTCCTCCTCATCATGCTCCAGATCCCGCTCTTCAGgtcggtaatg ... ggcatttcagGGTCCCTTGTAGAGCTGGCACATGCACAACTCCTATTCAAGTAACATCATC

EST: gi|30032255|gb|CB834106.1|CB834106

EST:     TCCAGATCCCGCTCTTCAG                         GGTCCCTTGTAGAGCTGGCACATGCACAACTCCTATTCAAGTAACATCATC
genomic: TCCAGATCCCGCTCTTCAGgtcggtaatg ... ggcatttcagGGTCCCTTGTAGAGCTGGCACATGCACAACTCCTATTCAAGTAACATCATC

EST: gi|32908647|gb|CF013460.1|CF013460

EST:     GCCTCCCGAGTCTACTTCCTCCTCATCATGCTCCAGATCCCGCTCTTCAG                         GGTCCCTTGTAGAGCTGGCACATGCACAACTCCTATTCAAGTAACATCATC
genomic: GCCTCCCGAGTCTACTTCCTCCTCATCATGCTCCAGATCCCGCTCTTCAGgtcggtaatg ... ggcatttcagGGTCCCTTGTAGAGCTGGCACATGCACAACTCCTATTCAAGTAACATCATC

EST: gi|211223887|gb|FK951157.1|FK951157

EST:     GCCTCCCGAGTCTACTTCCTCCTCATCATGCTCCAGATCCCGCTCTTCAG                         GGTCCCTTGTAGAGCTGGCACATGCACAACTCCTATTCAAGTAACATCATC
genomic: GCCTCCCGAGTCTACTTCCTCCTCATCATGCTCCAGATCCCGCTCTTCAGgtcggtaatg ... ggcatttcagGGTCCCTTGTAGAGCTGGCACATGCACAACTCCTATTCAAGTAACATCATC

EST: gi|211221827|gb|FK951142.1|FK951142

EST:     GCCTCCCGAGTCTACTTCCTCCTCATCATGCTCCAGATCCCGCTCTTCAG                         GGTCCCTTGTAGAGCTGGCACATGCACAACTCCTATTCAAGTAACATCATC
genomic: GCCTCCCGAGTCTACTTCCTCCTCATCATGCTCCAGATCCCGCTCTTCAGgtcggtaatg ... ggcatttcagGGTCCCTTGTAGAGCTGGCACATGCACAACTCCTATTCAAGTAACATCATC

EST: gi|8318775|gb|BE025340.1|BE025340

EST:     TTCCTCCTCATCATGCTCCAGATCCCGCTCTTCAG                         GGTCCCTTGTAGAGCTGGCACATGCACAACTCCTATTCAAGTAACATCATC
genomic: TTCCTCCTCATCATGCTCCAGATCCCGCTCTTCAGgtcggtaatg ... ggcatttcagGGTCCCTTGTAGAGCTGGCACATGCACAACTCCTATTCAAGTAACATCATC

EST: gi|211219763|gb|FK951134.1|FK951134

EST:     GCCTCCCGAGTCTACTTCCTCCTCATCATGCTCCAGATCCCGCTCTTCAG                         GGTCCCTTGTAGAGCTGGCACATGCACAACTCCTATTCAAGTAACATCATC
genomic: GCCTCCCGAGTCTACTTCCTCCTCATCATGCTCCAGATCCCGCTCTTCAGgtcggtaatg ... ggcatttcagGGTCCCTTGTAGAGCTGGCACATGCACAACTCCTATTCAAGTAACATCATC

EST: gi|211219766|gb|FK951137.1|FK951137

EST:     GCCTCCCGAGTCTACTTCCTCCTCATCATGCTCCAGATCCCGCTCTTCAG                         GGTCCCTTGTAGAGCTGGCACATGCACAACTCCTATTCAAGTAACATCATC
genomic: GCCTCCCGAGTCTACTTCCTCCTCATCATGCTCCAGATCCCGCTCTTCAGgtcggtaatg ... ggcatttcagGGTCCCTTGTAGAGCTGGCACATGCACAACTCCTATTCAAGTAACATCATC

EST: gi|31406373|gb|CD485105.1|CD485105

EST:     GCCTCCCGAGTCTACTTCCTCCTCATCATGCTCCAGATCCCGCTCTTCAG                         GGTCCCTTGTAGAGCTGGCACATGCACAACTCCTATTCAAGTAACATCATC
genomic: GCCTCCCGAGTCTACTTCCTCCTCATCATGCTCCAGATCCCGCTCTTCAGgtcggtaatg ... ggcatttcagGGTCCCTTGTAGAGCTGGCACATGCACAACTCCTATTCAAGTAACATCATC

EST: gi|74240707|gb|DT648621.1|DT648621

EST:     GCCTCCCGAGTCTACTTCCTCCTCATCATGCTCCAGATCCCGCTCTTCAG                         GGTCCCTTGTAGAGCTGGCACATGCACAACTCCTATTCAAGTAACATCATC
genomic: GCCTCCCGAGTCTACTTCCTCCTCATCATGCTCCAGATCCCGCTCTTCAGgtcggtaatg ... ggcatttcagGGTCCCTTGTAGAGCTGGCACATGCACAACTCCTATTCAAGTAACATCATC

EST: gi|211223884|gb|FK951154.1|FK951154

EST:     GCCTCCCGAGTCTACTTCCTCCTCATCATGCTCC--ATCCCGCTCTTCAG                         GGTCCCTTGTAGAGCTGGCACATGCACAACTCCTATTCAAGTAACATCATC
genomic: GCCTCCCGAGTCTACTTCCTCCTCATCATGCTCCAGATCCCGCTCTTCAGgtcggtaatg ... ggcatttcagGGTCCCTTGTAGAGCTGGCACATGCACAACTCCTATTCAAGTAACATCATC

EST: gi|76021511|gb|DT948681.1|DT948681

EST:     GCCTCCCGAGTCTACTTCCTCCTCATCATGCTCCAGATCCCGCTCTTCAG                         GGTCCCTTGTAGAGCTGGCACATGCACAACTCCTATTCAAGTAACATCATC
genomic: GCCTCCCGAGTCTACTTCCTCCTCATCATGCTCCAGATCCCGCTCTTCAGgtcggtaatg ... ggcatttcagGGTCCCTTGTAGAGCTGGCACATGCACAACTCCTATTCAAGTAACATCATC

EST: gi|211472795|gb|FL222251.1|FL222251

EST:     GCCTCCCGAGTCTACTTCCTCCTCATCATGCTCCAGATCCCGCTCTTCAG                         GGTCCCTTGTAGAGCTGGCACATGCACAACTCCTATTCAAGTAACATCATC
genomic: GCCTCCCGAGTCTACTTCCTCCTCATCATGCTCCAGATCCCGCTCTTCAGgtcggtaatg ... ggcatttcagGGTCCCTTGTAGAGCTGGCACATGCACAACTCCTATTCAAGTAACATCATC

EST: gi|6020755|gb|AW065563.1|AW065563

EST:     GTCTACTTCCTCCTCATCATGCTCCAGATCCCGCTCTTCAG                         GGTCCCTTGTAGAGCTGGCACATGCACAACTCCTATTCAAGTAACATCATC
genomic: GTCTACTTCCTCCTCATCATGCTCCAGATCCCGCTCTTCAGgtcggtaatg ... ggcatttcagGGTCCCTTGTAGAGCTGGCACATGCACAACTCCTATTCAAGTAACATCATC

EST: gi|211221830|gb|FK951145.1|FK951145

EST:     GCCTCCCGAGTCTACTTCCTCCTCATCATGCTCCAGATCCCGCTCTTCAG                         GGTCCCTTGTAGAGCTGGCACATGCACAACTCCTATTCAAGTAACATCATC
genomic: GCCTCCCGAGTCTACTTCCTCCTCATCATGCTCCAGATCCCGCTCTTCAGgtcggtaatg ... ggcatttcagGGTCCCTTGTAGAGCTGGCACATGCACAACTCCTATTCAAGTAACATCATC

EST: gi|91869972|gb|EB400635.1|EB400635

EST:     GCCTCCCGAGTCTACTTCCTCCTCATCATGCTCCAGATCCCGCTCTTCAG                         GGTCCCTTGTAGAGCTGGCACATGCACAACTCCTATTCAAGTAACATCATC
genomic: GCCTCCCGAGTCTACTTCCTCCTCATCATGCTCCAGATCCCGCTCTTCAGgtcggtaatg ... ggcatttcagGGTCCCTTGTAGAGCTGGCACATGCACAACTCCTATTCAAGTAACATCATC

EST: gi|211221833|gb|FK951148.1|FK951148

EST:     GCCTCCCGAGTCTACTTCCTTCTCATCATGCTCCAGATCCCGCTCTTCAG                         GGTCCCTTGTAGAGCTGGCACATGCACAACTCCTATTCAAGTAACATCATC
genomic: GCCTCCCGAGTCTACTTCCTCCTCATCATGCTCCAGATCCCGCTCTTCAGgtcggtaatg ... ggcatttcagGGTCCCTTGTAGAGCTGGCACATGCACAACTCCTATTCAAGTAACATCATC

EST: gi|19770170|gb|BQ034891.1|BQ034891

EST:     GCCTCCCGAGTCTACTTCCTCCTCATCATGCTCCAGATCCCGCTCTTCAG                         GGTCCCTTGTAGAGCTGGCACATGCACAACTCCTATTCAAGTAACATCATC
genomic: GCCTCCCGAGTCTACTTCCTCCTCATCATGCTCCAGATCCCGCTCTTCAGgtcggtaatg ... ggcatttcagGGTCCCTTGTAGAGCTGGCACATGCACAACTCCTATTCAAGTAACATCATC

EST: gi|211219761|gb|FK951132.1|FK951132

EST:     GCCTCCCGAGTCTACTTCCTCCTCATCATGCTCCAGATCCCGCTCTTCAG                         GGTCCCTTGTAGAGCTGGCACATGCACAACTCCTATTCAAGTAACATCATC
genomic: GCCTCCCGAGTCTACTTCCTCCTCATCATGCTCCAGATCCCGCTCTTCAGgtcggtaatg ... ggcatttcagGGTCCCTTGTAGAGCTGGCACATGCACAACTCCTATTCAAGTAACATCATC

EST: gi|37419378|gb|CF647370.1|CF647370

EST:     CTTCCTCCTCATCATGCTCCAGATCCCGCTCTTCAG                         GGTCCCTTGTAGAGCTGGCACATGCACAACTCCTATTCAAGTAACATCATC
genomic: CTTCCTCCTCATCATGCTCCAGATCCCGCTCTTCAGgtcggtaatg ... ggcatttcagGGTCCCTTGTAGAGCTGGCACATGCACAACTCCTATTCAAGTAACATCATC

EST: gi|211472794|gb|FL222250.1|FL222250

EST:     GCCTCCCGAGTCTACTTCCTCCTCATCATGCTCCAGATCCCGCTCTTCAG                         GGTCCCTTGTAGAGCTGGCACATGCACAACTCCTATTCAAGTAACATCATC
genomic: GCCTCCCGAGTCTACTTCCTCCTCATCATGCTCCAGATCCCGCTCTTCAGgtcggtaatg ... ggcatttcagGGTCCCTTGTAGAGCTGGCACATGCACAACTCCTATTCAAGTAACATCATC

EST: gi|32908451|gb|CF013264.1|CF013264

EST:     GCCTCCCGAGTCTACTTCCTCCTCATGATGCTCCAGATCCCGCTCTTCAG                         GGTCCCTTGTAGAGCTGGCACATGCACAACTCCTATTCAAGTAACATCATC
genomic: GCCTCCCGAGTCTACTTCCTCCTCATCATGCTCCAGATCCCGCTCTTCAGgtcggtaatg ... ggcatttcagGGTCCCTTGTAGAGCTGGCACATGCACAACTCCTATTCAAGTAACATCATC

EST: gi|211221835|gb|FK951150.1|FK951150

EST:     GCCTCCCGAGTCTACTTCCTCCTCATCATGCTCCAGATCCCGCTCTTCAG                         GGTCCCTTGTAGAGCTGGCACATGCACAACTCCTATTCAAGTAACATCATC
genomic: GCCTCCCGAGTCTACTTCCTCCTCATCATGCTCCAGATCCCGCTCTTCAGgtcggtaatg ... ggcatttcagGGTCCCTTGTAGAGCTGGCACATGCACAACTCCTATTCAAGTAACATCATC

EST: gi|76021510|gb|DT948680.1|DT948680

EST:     CCAGATCCCGCTCTTCAGG                         GGTCCCTTGTAGAGCTGGCACATGCACAACTCCTATTCAAGTAACATCAT
genomic: CCAGATCCCGCTCTTCA-Ggtcggtaatg ... ggcatttcagGGTCCCTTGTAGAGCTGGCACATGCACAACTCCTATTCAAGTAACATCAT

EST: gi|211221836|gb|FK951151.1|FK951151

EST:     GCCTCCCGAGTCTACTTCCTCCTCATCATGCTCCAGATCCCGCTCTTCAG                         GGTCCCTTGTAGAACTGGCACATGCACAACTCCTATTCAAGTAACATCATC
genomic: GCCTCCCGAGTCTACTTCCTCCTCATCATGCTCCAGATCCCGCTCTTCAGgtcggtaatg ... ggcatttcagGGTCCCTTGTAGAGCTGGCACATGCACAACTCCTATTCAAGTAACATCATC

EST: gi|5268989|gb|AI770953.1|AI770953

EST:     GCCTCCCGAGTCTACTTCCTCCTCATCATGCTCCAGATCCCGCTCTTCAG                         GGTCCCTTGTAGAGCTGGCACATGCACAACTCCTATTCAAGTAACATCATC
genomic: GCCTCCCGAGTCTACTTCCTCCTCATCATGCTCCAGATCCCGCTCTTCAGgtcggtaatg ... ggcatttcagGGTCCCTTGTAGAGCTGGCACATGCACAACTCCTATTCAAGTAACATCATC

EST: gi|211242970|gb|FL282603.1|FL282603

EST:     GCCTCCCGAGTCTACTTCCTCCTCATCATGCTCCAGATCCCGCTCTTCAG                         GGTCCCTTGTAGAGCTGGCACATGCACAACTCCTATTCAAGTAACATCATC
genomic: GCCTCCCGAGTCTACTTCCTCCTCATCATGCTCCAGATCCCGCTCTTCAGgtcggtaatg ... ggcatttcagGGTCCCTTGTAGAGCTGGCACATGCACAACTCCTATTCAAGTAACATCATC

EST: gi|26455738|gb|CA827321.1|CA827321

EST:     GCCTCCCGAGTCTACTTCCTCCTCATCATGCTCCAGATCCCGCTCTTCAG                         GGTCCCTTGTAGAGCTGGCACATGCACAACTCCTATTCAAGTAACATCATC
genomic: GCCTCCCGAGTCTACTTCCTCCTCATCATGCTCCAGATCCCGCTCTTCAGgtcggtaatg ... ggcatttcagGGTCCCTTGTAGAGCTGGCACATGCACAACTCCTATTCAAGTAACATCATC

EST: gi|211221825|gb|FK951140.1|FK951140

EST:     GCCTCCCGAGTCTACTTCCTCCTCATCATGCTCCAGATCCCGCTCTTCAG                         GGTCCCTTGTAGAGCTGGCACATGCACAACTCCTATTCAAGTAACATCATC
genomic: GCCTCCCGAGTCTACTTCCTCCTCATCATGCTCCAGATCCCGCTCTTCAGgtcggtaatg ... ggcatttcagGGTCCCTTGTAGAGCTGGCACATGCACAACTCCTATTCAAGTAACATCATC

EST: gi|211219760|gb|FK951131.1|FK951131

EST:     GCCTCCCGAGTCTACTTCCTCCTCATCATGCTCCAGATCCCGCTCTTCAG                         GGTCCCTTGTAGAGCTGGCACATGCACAACTCCTATTCAAGTAACATCATC
genomic: GCCTCCCGAGTCTACTTCCTCCTCATCATGCTCCAGATCCCGCTCTTCAGgtcggtaatg ... ggcatttcagGGTCCCTTGTAGAGCTGGCACATGCACAACTCCTATTCAAGTAACATCATC

EST: gi|211223890|gb|FK951160.1|FK951160

EST:     GCCTCCCGAGTCTACTTCCTCCTCATCATGCTCCAGATCCCGCTCTTCAG                         GGTCCCTTGTAGAGCTGGCACATGCACAACTCCTATTCAAGTAACATCATC
genomic: GCCTCCCGAGTCTACTTCCTCCTCATCATGCTCCAGATCCCGCTCTTCAGgtcggtaatg ... ggcatttcagGGTCCCTTGTAGAGCTGGCACATGCACAACTCCTATTCAAGTAACATCATC

EST: gi|148967227|gb|EE018425.2|EE018425

EST:     GCCTCCCGAGTCTACTTCCTCCTCATCATGCTCCAGATCCCGCTCTTCAG                         GGTCCCTTGTAGAGCTGGCACATGCACAACTCCTATTCAAGTAACATCATC
genomic: GCCTCCCGAGTCTACTTCCTCCTCATCATGCTCCAGATCCCGCTCTTCAGgtcggtaatg ... ggcatttcagGGTCCCTTGTAGAGCTGGCACATGCACAACTCCTATTCAAGTAACATCATC

EST: gi|211221824|gb|FK951139.1|FK951139

EST:     GCCTCCCGAGTCTACTTCCTCCTCATCATGCTCCAGATCCCGCTCTTCAG                         GGTCCCTTGTAGAGCTGGCACATGCACAACTCCTATTCAAGTAACATCATC
genomic: GCCTCCCGAGTCTACTTCCTCCTCATCATGCTCCAGATCCCGCTCTTCAGgtcggtaatg ... ggcatttcagGGTCCCTTGTAGAGCTGGCACATGCACAACTCCTATTCAAGTAACATCATC

EST: gi|211221828|gb|FK951143.1|FK951143

EST:     GCCTCCCGAGTCTACTTCCTCCTCATCATGCTCCAGATCCCGCTCTTCAG                         GGTCCCTTGTAGAGCTGGCACATGCACAACTCCTATTCAAGTAACATCATC
genomic: GCCTCCCGAGTCTACTTCCTCCTCATCATGCTCCAGATCCCGCTCTTCAGgtcggtaatg ... ggcatttcagGGTCCCTTGTAGAGCTGGCACATGCACAACTCCTATTCAAGTAACATCATC

EST: gi|211472793|gb|FL222249.1|FL222249

EST:     GCCTCCCGAGTCTACTTCCTCCTCATCATGCTCCAGATCCCGCTCTTCAG                         GGTCCCTTGTAGAGCTGGCACATGCACAACTCCTATTCAAGTAACATCATC
genomic: GCCTCCCGAGTCTACTTCCTCCTCATCATGCTCCAGATCCCGCTCTTCAGgtcggtaatg ... ggcatttcagGGTCCCTTGTAGAGCTGGCACATGCACAACTCCTATTCAAGTAACATCATC

EST: gi|29130621|gb|CB381325.1|CB381325

EST:     GCCTCCCGAGTCTACTTCCTCCTCATCATGCTCCAGATCCCGCTCTTCAG                         GGTCCCTTGTAGAGCTGGCACATGCACAACTCCTATTCAAGTAACATCATC
genomic: GCCTCCCGAGTCTACTTCCTCCTCATCATGCTCCAGATCCCGCTCTTCAGgtcggtaatg ... ggcatttcagGGTCCCTTGTAGAGCTGGCACATGCACAACTCCTATTCAAGTAACATCATC

EST: gi|211223889|gb|FK951159.1|FK951159

EST:     GCCTCCCGAGTCTACTTCCTCCTCATCATGCTCCAGATCCCGCTCTTCAG                         GGTCCCTTGTAGAGCTGGCACATGCACAACTCCTATTCAAGTAACATCATC
genomic: GCCTCCCGAGTCTACTTCCTCCTCATCATGCTCCAGATCCCGCTCTTCAGgtcggtaatg ... ggcatttcagGGTCCCTTGTAGAGCTGGCACATGCACAACTCCTATTCAAGTAACATCATC

EST: gi|211219762|gb|FK951133.1|FK951133

EST:     GCCTCCCGAGTCTACTTCCTCCTCATCATGCTCCAGATCCCGCTCTTCAG                         GGTCCCTTGTAGAGCTGGCACATGCACAACTCCTATTCAAGTAACATCATC
genomic: GCCTCCCGAGTCTACTTCCTCCTCATCATGCTCCAGATCCCGCTCTTCAGgtcggtaatg ... ggcatttcagGGTCCCTTGTAGAGCTGGCACATGCACAACTCCTATTCAAGTAACATCATC

EST: gi|32908815|gb|CF013628.1|CF013628

EST:     GCCTCCCGAGTCTACTTCCTCCTCATCATGCTCCAGATCCCGCTCTTCAG                         GGTCCCTTGTAGAGCTGGCACATGCACAACTCCTATTCAAGTAACATCATC
genomic: GCCTCCCGAGTCTACTTCCTCCTCATCATGCTCCAGATCCCGCTCTTCAGgtcggtaatg ... ggcatttcagGGTCCCTTGTAGAGCTGGCACATGCACAACTCCTATTCAAGTAACATCATC

EST: gi|149098823|gb|EE184836.2|EE184836

EST:     GCCTCCCGAGTCTACTTCCTCCTCATCATGCTCCAGATCCCGCTCTTCAG                         GGTCCCTTGTAGAGCTGGCACATGCACAACTCCTATTCAAGTAACATCATC
genomic: GCCTCCCGAGTCTACTTCCTCCTCATCATGCTCCAGATCCCGCTCTTCAGgtcggtaatg ... ggcatttcagGGTCCCTTGTAGAGCTGGCACATGCACAACTCCTATTCAAGTAACATCATC

RNA-Seq data

ATGC Supported by RNA-Seq exonic block that spans over the splice site

atgs Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.

Found data for 4 RNA-Seq libraries.

Block sizes: 45 (upstream exon), 49 (downstream exon)
Score: 91

AGCGCCGACGGGTGGGCAGCGGTTGGACGAGCCGTCGGATCTCCATCTACGCCTCCCGAGTCTACTTCCTCCTCATCATGCTCCAGATCCCGCTCTTCAGgtcggtaatg ... ggcatttcagGGTCCCTTGTAGAGCTGGCACATGCACAACTCCTATTCAAGTAACATCATCTCAGTTGGTCTCAAATGATATATTCCCAGCAGCTGTTGTGAAGGCCATG

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 120

Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 125

Block sizes: 49 (upstream exon), 47 (downstream exon)
Score: 97

atgc intronic sequence ATGC exonic sequence

Intronic sequence truncated to 55 bases.

ttatgagcagggacataatgtgctaaggggatttcgcttgcttttggcatttcagGGTCCCTTGTAGAGCTGGCACATGCACAACTCCTATTCAAGTAACATCATCTCAGTTGGTCTCAAATGATATATTCCCAGCAGCTGTTGTGAAGGCCATG

            acataat  TA-rich tract

Putative cis-regulatory sequences

atgc	intron	ATGC	exonic elements by Pertea et al.
ATGC	exon	atgc	putative intronic elements
		ATGC	putative exonic elements identified for retained introns

        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tgtgtataggaattaattggaaggattagaagagttggagttcttttatgagcagggacataatgtgctaaggggatttcgcttgcttttggcatttcagGGTCCCTTGTAGAGCTGGCACATGCACAACTCCTATTCAAGTAACATCATCTCAGTTGGTCTCAAATGATATATTCCCAGCAGCTGTTGTGAAGGCCATG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgcta