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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctgtttacttgtatatcgatttattcattgtacaatttgtgctccagcaaatacttatgagtagcttatgtgactgattgatcaacttcctaatacgcagATGGCTGCTCATAGGGCTTTTCAATTCTGTAAACAGTATAAGAGGACAACTGAATTCCGTAGGTTGTGTGAGATAATCAGAAATCATCTCGCCAATCTGA

Basic information

species Zea mays
transcript GRMZM2G070487_T04
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G070487_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os01g03070.1 (Oryza sativa), 3'ss of exon 3
ctgtttacttgtatatcgatttattcattgtacaatttgtgctccagcaaatacttatg-agtagcttatgtgactga---ttgatcaacttcctaatacgcagATGGCTGCTCATAGGGCTTTTCAATTCTGTAAACAGTATAAGAGGACAACTGAATTCCGTAGGTTGTGTGAGATAATCAGAAATCATCTCGCCAATCTGA
 |  | | ||||  |   ||| |||   || |||   | | ||  | ||| ||||| || | | ||  |||   || |    |  | ||  ||  | |  ||||||| ||||||| | |||||||||||| ||||| ||||||||||| || |||||||||||||||||||| |||||||| ||||||||||| || ||  |||
-ttctgaattgtgaa---attgatttcctgcacatagtcttctgtaccaagtacttttgcatttgccaatgcatctaaaccctttttaatctctcattttgcagATGACTGCTCACAAGGCTTTTCAATTTTGTAAGCAGTATAAGAGAACGACTGAATTCCGTAGGTTGTGCGAGATAATAAGAAATCATCTTGCTAACTTGA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agcaaatacttatgagtagcttatgtgactgattgatcaacttcctaatacgcagATGGCTGCTCATAGGGCTTTTCAATTCTGTAAACAGTATAAGAGGACAACTGAATTCCGTAGGTTGTGTGAGATAATCAGAAATCATCTCGCCAATCTGA
                                          tcctaat  putative branch site (score: 2)
                                        cttcct  CT-rich tract
     atacttat  TA-rich tract