Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcggacagacaatttcacttatttttttatgtgcatacttgttaatgaccatttttctatgtgtcctcaattttaatttattttgtttaaaaacttacagGAATTCAACATTGAGAAGCTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATTAGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAA

Basic information

species Zea mays
transcript GRMZM2G070360_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G070360_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os01g46980.1 (Oryza sativa), 3'ss of exon 1
tcggac-agacaatttcacttatttttttatgtgcatacttgttaatgaccatttttctatgtgtcctcaattttaatttattttgtttaaaaacttacagGAATTCAACATTGAGAAGCTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATTAGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAA
||  || ||| ||       |   ||| |   |||  ||   |   | |||||| |  | |   |||  | | |||| ||||||   | |     || ||||| ||||| ||||||||||| || |||||||||||||||||||||||||| || ||||| |||||||| ||||||||||| || |||||  | |||||||
tcaaaccagataaaccactatgcctttatcattgctgacagttggttaaccattctgatttccttccata-tgttaacttatttgtataatgtgtttgcagGAGTTCAATATTGAGAAGCTTCAACTTGTTGAAGCTGAGAAAAAGAAGATCAGGCAAGAATATGAACGGAAAGAGAAGCAAGTCGAAGTTAGAAAGAAAA

upper sequence: GRMZM2G070360_T01 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA08G02420.1 (Glycine max), 3'ss of exon 1
tcggacagacaatttcacttatttttttatgtgcatacttgttaatgaccatttttctatgtgtcctc-aattttaatttattttgtttaaaaacttacagGAATTCAACATTGAGAAGCTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATTAGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAA
                   | | | || || |    | ||  |  |      | | | ||   | ||| ||   | |||  |  | ||        | ||||||||||| || |||||||||||| | || ||||| ||||| |||||||  || |||||||| |||||||||||    || || ||| | || ||||| |
------------------gtttctcttcatttcaccattttctcctctttcgtctcccattcatgctctaaaactgattcgtacttttcct---tctgcagGAATTCAATATCGAGAAGCTGCAGTTAGTCGAAGCCGAGAAGAAGAAGACCAGGCAAGAGTACGAACGCAAAGAACGCCAAGTCGAAATTCGCAAGAAGA

upper sequence: GRMZM2G070360_T01 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA08G02390.2 (Glycine max), 3'ss of exon 1
tcggacagacaatttcacttatttttttatgtgcatacttgttaatgaccatttttctatgtgtcctcaattttaattt--attttgtttaaaaacttacagGAATTCAACATTGAGAAGCTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATTAGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAA
                   | | | || || |   ||| |     | |||||||| |  | | || ||  ||| ||  |  ||  |  ||       | ||||||||||| || |||||||||||| | |||||||| || || |||||||| || ||||| || ||||||||||||   || || ||| | || ||||| |
------------------gtttctcttcatttcattacct-----tcaccattttcccctctttcgtcgttttcaaactgaatcgtacttttccttctgcagGAATTCAATATCGAGAAGCTGCAGTTGGTTGAAGCCGAAAAGAAGAAGATCAGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGA

upper sequence: GRMZM2G070360_T01 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA05G37160.1 (Glycine max), 3'ss of exon 1
tcggacagacaatttcacttatttttttatgtgcatacttgttaatgaccatttttctatgtgtcctcaattttaatttattttgtttaaaaacttacagGAATTCAACATTGAGAAGCTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATTAGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAA
                     ||| || || |    | ||  |  |      |||   ||   | |||  ||  |    ||  |  ||       | ||||||||||| || |||||||||||| | || ||||| || || |||||||| || ||||| || ||||||||||||   || || ||| | || ||||| |
--------------------gtttcttcatttcgccatttcctcctctttcgtttcaaattcatgctc--ttaaacggaatcgtacttttccttctgcagGAATTCAATATCGAGAAGCTGCAGTTGGTCGAAGCCGACAAGAAGAAGATCAGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGA

upper sequence: GRMZM2G070360_T01 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA05G37150.1 (Glycine max), 3'ss of exon 1
tcggacagacaatttcacttatttttttatgtgcatacttgttaatgaccatttttctatgtgtcctcaattttaatttattttgtttaaaaacttacagGAATTCAACATTGAGAAGCTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATTAGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAA
                     ||| || || |    | ||  |         ||| | ||   | ||| |     | |     | ||        | ||||||||||| || |||||||||||| | || ||||| || || |||||||| || ||||| || ||||||||||||   || |||||| | || ||||| |
--------------------gtttcttcatttcaccattttctcccttttcgtttccaattcatgctctaaacggagtcgcacttttcct---tctgcagGAATTCAATATCGAGAAGCTGCAGTTGGTCGAAGCCGACAAGAAGAAGATCAGGCAAGAATACGAACGCAAAGAGCGCCAAGTTGAAATTCGCAAGAAGA

upper sequence: GRMZM2G070360_T01 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA05G37190.1 (Glycine max), 3'ss of exon 1
tcggacagacaatttcacttatttttttatgtgcatacttgttaatgaccatttttctatgtgtcctcaattttaatttattttgtttaaaaacttacagGAATTCAACATTGAGAAGCTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATTAGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAA
                     ||| || || |    | ||  |  |      |||   ||   | |||  ||  |    ||  |  ||       | ||||||||||| || |||||||||||| | || ||||| || || |||||||| || ||||| || ||||||||||||   || |||||| | || ||||| |
--------------------gtttcttcatttcgccatttcctcctctttcgtttcaaattcatgctc--ttaaacggaatcgtacttttccttctgcagGAATTCAATATCGAGAAGCTGCAGTTGGTCGAAGCCGACAAGAAGAAGATCAGGCAAGAATACGAACGCAAAGAGCGCCAAGTTGAAATTCGCAAGAAGA

upper sequence: GRMZM2G070360_T01 (Zea mays), 3'ss of exon 1
lower sequence: AT4G11150.1 (Arabidopsis thaliana), 3'ss of exon 1
----------tcggacagacaatttcacttatt-----tttttatgtgcatacttg--ttaatgaccatttttctatgtgtcctcaattttaatttattttgtttaaaaacttacagGAATTCAACATTGAGAAGCTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATTAGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAA
          | |         || || ||||      || | || || ||   |   | |||    |    | ||| ||   |   | |  ||||  ||| ||| || | |   ||||||||||||||||||| || ||||||||||| || ||||| |||||||| || ||||| |||||    || |||||||| | ||| || || ||||| |
gtatgatctttagtgtttctgtttccatttatcagatcttatgatatgaatctctaattcaatcgtaagcggtttatctg--attgttatcgatttggtttatttgaataatcgtagGAATTCAACATTGAGAAACTCCAGCTTGTTGAGGCGGAGAAGAAGAAGATCAGGCAAGATTATGAGAAGAAGGAGAAGCAAGCTGATGTTCGCAAGAAGA

upper sequence: GRMZM2G070360_T01 (Zea mays), 3'ss of exon 1
lower sequence: AT1G64200.1 (Arabidopsis thaliana), 3'ss of exon 1
-tcggacagacaatttca-cttatttttttatgtgcatacttgttaatgaccatttttctatgtgtcctcaattttaatttattttgtttaaaaactt-acagGAATTCAACATTGAGAAGCTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATTAGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAA
 |   |  ||   |   | ||||   |  | ||||     || ||  ||| |||      ||| ||  | | | | ||     || || |    |  | |||||||||||||||||||||  |||||||||||||||| ||||| |||||||||||||||||||||||    || ||||| ||||| || ||  | ||||| |
tttacattgatcttcggatcttaagatcctctgtgag--attatttctgaacatgaaaaaatg-gttttgagtctaaaaccgattggtcttttgatgtgacagGAATTCAACATTGAGAAATTGCAGCTTGTTGAAGCAGAGAAGAAGAAGATTAGACAAGAGTATGAGAAGAAGGAGAAACAGGTCGATGTCAGAAAGAAGA

upper sequence: GRMZM2G070360_T01 (Zea mays), 3'ss of exon 1
lower sequence: Vv02s0025g01000.t01 (Vitis vinifera), 3'ss of exon 1
tcggacagacaatttcacttatttttttatgtgcatacttgttaatgac-catttttctatgtgtcctcaattttaat--ttattttgtttaaaaacttacagGAATTCAACATTGAGAAGCTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATTAGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAA
      || | |||   ||      |||   | || | |  |  || ||  || |   | ||  |     ||  || |  |  ||| ||        ||  |||||||||||||||||||| |||||||||||||||| ||||| |||||||| ||||| || ||||| || ||||||||||| |||||  | ||||||||||
--ttgtagtcgattaagctgtagagtttggat-cagattgatacataacgtatatggatgtggatttgttatggtattgatggtttagtggcggtttttgtagGAATTCAACATTGAGAAGTTGCAGCTTGTTGAAGCGGAGAAGAAGAAGATCAGACAGGAATATGAGCGAAAAGAGAAGCAAGTTGATATTCGGAAGAAAA

upper sequence: GRMZM2G070360_T01 (Zea mays), 3'ss of exon 1
lower sequence: PP1S269_14V6.3 (Physcomitrella patens), 3'ss of exon 1
-----tcggacagacaatttcacttatttttttatgtgcatacttgttaatgaccatttttctatgtgtcctcaattttaatttattttgtttaaaaacttacagGAATTCAACATTGAGAAGCTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATTAGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAA
     |  |     |   ||  ||| |||| ||   | |  | |  | |  |        |  ||  |  || |||    ||  |    | |||     || ||||||||||||||||||||||| ||| |||| |||||||| |||||||||||  |||| ||||  || ||||| |||||||| || ||||| ||    ||||
tgttttttgttttccttctttcctttttttcttccttaccaattcttcatagcgtgcggatacatagggtctaaataacgatccacggggctta-----tttcagGAATTCAACATTGAGAAGCTACAGATTGTGGAAGCTGAAAAAAAGAAGATCCGACAGGAGTTCGAGCGCAAGGAGAAGCAAGTGGAAGTTCGTCGTAAAA

upper sequence: GRMZM2G070360_T01 (Zea mays), 3'ss of exon 1
lower sequence: PP1S269_15V6.1 (Physcomitrella patens), 3'ss of exon 1
tcggacagacaatttcacttat-----ttttttatgtgcatacttgttaatgaccatttttctatgtgtcctcaattttaatttattttgtttaaaaacttacagGAATTCAACATTGAGAAGCTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATTAGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAA
    |  ||  ||| |  |  |     | ||  ||||    |  |||  |  ||   | || |||  |   | ||| ||  |      || || ||      ||||||||||||||||||||| | ||| |||| |||||||| || ||||| ||| | || |||| ||| || || |||||||| || ||||| ||    ||||
-tcaattgatgattccgttggtaaggctcttccatgttatcaactgtgcaacacgtgtcttatatcggaattaaatgttgttgaggggtggttcaa----cgcagGAATTCAACATTGAGAAGTTACAGATTGTAGAAGCTGAAAAGAAGAAAATTCGGCAGGAGTTTGAGCGTAAGGAGAAGCAAGTGGAAGTTCGCCGTAAAA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211441647|gb|FL403716.1|FL403716
EST:     GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAG                         GAATTCAACATTGAGAAGCTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATT
genomic: GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAGgtcagttttc ... aaacttacagGAATTCAACATTGAGAAGCTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATT
EST: gi|211298626|gb|FL380968.1|FL380968
EST:     GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAG                         GAATTCAACATTGAGAAGCTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATT
genomic: GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAGgtcagttttc ... aaacttacagGAATTCAACATTGAGAAGCTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATT
EST: gi|9254375|gb|BE344843.1|BE344843
EST:     GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAG                         GAATTCAACATTGAGAAGCTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATT
genomic: GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAGgtcagttttc ... aaacttacagGAATTCAACATTGAGAAGCTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATT
EST: gi|211533621|gb|FL412538.1|FL412538
EST:     GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAG                         GAATTCAACATTGAGAAGCTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATT
genomic: GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAGgtcagttttc ... aaacttacagGAATTCAACATTGAGAAGCTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATT
EST: gi|93017021|gb|EB642541.1|EB642541
EST:     GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAG                         GAATTCAACATTGAGAAGCTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATT
genomic: GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAGgtcagttttc ... aaacttacagGAATTCAACATTGAGAAGCTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATT
EST: gi|71440306|gb|DR821356.1|DR821356
EST:     GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAG                         GAATTCAACATTGAGAAGCTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATT
genomic: GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAGgtcagttttc ... aaacttacagGAATTCAACATTGAGAAGCTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATT
EST: gi|91056063|gb|EB166481.1|EB166481
EST:     GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAG                         GAATTCAACATTGAGAAGCTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATT
genomic: GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAGgtcagttttc ... aaacttacagGAATTCAACATTGAGAAGCTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATT
EST: gi|5895940|gb|AW037186.1|AW037186
EST:     GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCTGAGGAG                         GAATTCAACATTGAGAAGCTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATT
genomic: GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAGgtcagttttc ... aaacttacagGAATTCAACATTGAGAAGCTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATT
EST: gi|76291539|gb|DV031107.1|DV031107
EST:     CGAGATCTCCGTCTCCGCCGAGGAG                         GAATTCAACATTGAGAAGCTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATT
genomic: CGAGATCTCCGTCTCCGCCGAGGAGgtcagttttc ... aaacttacagGAATTCAACATTGAGAAGCTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATT
EST: gi|211150220|gb|FL393279.1|FL393279
EST:     GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAG                         GAATTCAACATTGAGAAGCTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATT
genomic: GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAGgtcagttttc ... aaacttacagGAATTCAACATTGAGAAGCTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATT
EST: gi|148979069|gb|EE026482.2|EE026482
EST:     GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAG                         GAATTCAACATTGAGAAGCTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATT
genomic: GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAGgtcagttttc ... aaacttacagGAATTCAACATTGAGAAGCTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATT
EST: gi|211116922|gb|FL407744.1|FL407744
EST:     GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAG                         GAATTCAACATTGAGAAGCTGCAGCTTGTTGAAGCTGAG
genomic: GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAGgtcagttttc ... aaacttacagGAATTCAACATTGAGAAGCTGCAGCTTGTTGAAGCTGAG
EST: gi|211210061|gb|FL412308.1|FL412308
EST:     GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAG                         GAATTCAACATTGAGAAGCTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATT
genomic: GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAGgtcagttttc ... aaacttacagGAATTCAACATTGAGAAGCTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATT
EST: gi|211201727|gb|FL385153.1|FL385153
EST:     GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAG                         GAATTCAACATTGAGAAGCTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATT
genomic: GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAGgtcagttttc ... aaacttacagGAATTCAACATTGAGAAGCTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATT
EST: gi|85153049|gb|DW587948.1|DW587948
EST:     GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAG                         GAATTCAACATTGAGAAGCTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATT
genomic: GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAGgtcagttttc ... aaacttacagGAATTCAACATTGAGAAGCTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATT
EST: gi|22936000|gb|BU572275.1|BU572275
EST:     GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAG                         GAATTCAACATTGAGAAGCTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATT
genomic: GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAGgtcagttttc ... aaacttacagGAATTCAACATTGAGAAGCTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATT
EST: gi|211317007|gb|FL374745.1|FL374745
EST:     GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAG                         GAATTCAACATTGAGAAGCTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATT
genomic: GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAGgtcagttttc ... aaacttacagGAATTCAACATTGAGAAGCTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATT
EST: gi|211039940|gb|FL415155.1|FL415155
EST:     GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAG                         GAATTCAACATTGAGAAGCTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATT
genomic: GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAGgtcagttttc ... aaacttacagGAATTCAACATTGAGAAGCTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATT
EST: gi|211309675|gb|FL422296.1|FL422296
EST:     GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAG                         GAATTCAACATTGAGAAGCTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATT
genomic: GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAGgtcagttttc ... aaacttacagGAATTCAACATTGAGAAGCTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATT
EST: gi|6194518|gb|AW146622.1|AW146622
EST:     GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCTGAGGAG                         GAATTCAACATTGAGAAGCTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATT
genomic: GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAGgtcagttttc ... aaacttacagGAATTCAACATTGAGAAGCTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATT
EST: gi|93017439|gb|EB642959.1|EB642959
EST:     GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAG                         GAATTCAACATTGAGAAGCTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATT
genomic: GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAGgtcagttttc ... aaacttacagGAATTCAACATTGAGAAGCTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATT
EST: gi|211311559|gb|FL415806.1|FL415806
EST:     GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAG                         GAATTCAACATTGAGAAGCTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATT
genomic: GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAGgtcagttttc ... aaacttacagGAATTCAACATTGAGAAGCTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATT
EST: gi|211348455|gb|FL392067.1|FL392067
EST:     GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAG                         GAATTCAACATTGAGAAGCTGCAGCTTGTTGAAGCTGAGAAAWAGAAGATT
genomic: GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAGgtcagttttc ... aaacttacagGAATTCAACATTGAGAAGCTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATT
EST: gi|211525021|gb|FL424291.1|FL424291
EST:     GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAG                         GAATTCAACATTGAGAAGCTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATT
genomic: GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAGgtcagttttc ... aaacttacagGAATTCAACATTGAGAAGCTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATT
EST: gi|211332900|gb|FL428098.1|FL428098
EST:     GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAG                         GAATTCGACATTGAGAAGCTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATT
genomic: GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAGgtcagttttc ... aaacttacagGAATTCAACATTGAGAAGCTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATT
EST: gi|116817248|gb|EC860065.1|EC860065
EST:     GAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAG                         GAA-TCAAC-TTGAGAAGCTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATT
genomic: GAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAGgtcagttttc ... aaacttacagGAATTCAACATTGAGAAGCTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATT
EST: gi|211014107|gb|FL390333.1|FL390333
EST:     GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAG                         GAATTCAACATTGAGAAGCTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATT
genomic: GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAGgtcagttttc ... aaacttacagGAATTCAACATTGAGAAGCTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATT
EST: gi|74235297|gb|DT643211.1|DT643211
EST:     GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAG                         GAATTCAACATTGAGAAGCTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATT
genomic: GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAGgtcagttttc ... aaacttacagGAATTCAACATTGAGAAGCTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATT
EST: gi|88746236|gb|DY530377.1|DY530377
EST:     GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAG                         GAATTCAACATTGAAAAGCTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATT
genomic: GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAGgtcagttttc ... aaacttacagGAATTCAACATTGAGAAGCTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATT
EST: gi|211311846|gb|FL427607.1|FL427607
EST:     GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAG                         GAATTCAACATTGAGAAGCTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATT
genomic: GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAGgtcagttttc ... aaacttacagGAATTCAACATTGAGAAGCTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATT
EST: gi|211205212|gb|FL424415.1|FL424415
EST:     GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAG                         GAATTCAACATTGAGAAGCTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATT
genomic: GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAGgtcagttttc ... aaacttacagGAATTCAACATTGAGAAGCTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATT
EST: gi|71331382|gb|DR802528.1|DR802528
EST:     GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAG                         GAATTCAACATTGAGAAGCTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATT
genomic: GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAGgtcagttttc ... aaacttacagGAATTCAACATTGAGAAGCTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATT
EST: gi|211348825|gb|FL411951.1|FL411951
EST:     GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAG                         GAATTCAACATTGAGAAGCTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATT
genomic: GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAGgtcagttttc ... aaacttacagGAATTCAACATTGAGAAGCTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATT
EST: gi|149095115|gb|EE180726.2|EE180726
EST:     GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAG                         GAATTCAACATTGAGAAGCTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATT
genomic: GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAGgtcagttttc ... aaacttacagGAATTCAACATTGAGAAGCTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATT
EST: gi|211315184|gb|FL384858.1|FL384858
EST:     GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAG                         GAATTCAACATTGAGAAGCTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATT
genomic: GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAGgtcagttttc ... aaacttacagGAATTCAACATTGAGAAGCTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATT
EST: gi|6194534|gb|AW146638.1|AW146638
EST:     GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCTGAGGAG                         GAATTCAACATTGAGAAGCTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATT
genomic: GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAGgtcagttttc ... aaacttacagGAATTCAACATTGAGAAGCTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATT
EST: gi|94478080|gb|EB707038.1|EB707038
EST:     GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAG                         GAATTCAACATTGAGAAGCTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATT
genomic: GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAGgtcagttttc ... aaacttacagGAATTCAACATTGAGAAGCTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATT
EST: gi|60358982|gb|DN225955.1|DN225955
EST:     GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAG                         GAATTCAACATTGAGAAGCTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATT
genomic: GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAGgtcagttttc ... aaacttacagGAATTCAACATTGAGAAGCTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATT
EST: gi|148933452|gb|EC877146.2|EC877146
EST:     GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAG                         GAATTCAACATTGAGAAGCTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATT
genomic: GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAGgtcagttttc ... aaacttacagGAATTCAACATTGAGAAGCTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATT
EST: gi|211054348|gb|FL401195.1|FL401195
EST:     GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAG                         GAATTCAACATTGAGAAGCTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATT
genomic: GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAGgtcagttttc ... aaacttacagGAATTCAACATTGAGAAGCTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATT
EST: gi|211048985|gb|FL423000.1|FL423000
EST:     GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAG                         GAATTCAACATTGAGAAGCTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATT
genomic: GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAGgtcagttttc ... aaacttacagGAATTCAACATTGAGAAGCTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATT
EST: gi|211199605|gb|FL408268.1|FL408268
EST:     GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAG                         GAATTCAACATTGAGAAGCTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATT
genomic: GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAGgtcagttttc ... aaacttacagGAATTCAACATTGAGAAGCTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATT
EST: gi|211392867|gb|FL400605.1|FL400605
EST:     GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAG                         GAATTCAACATTGAGAAGCTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATT
genomic: GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAGgtcagttttc ... aaacttacagGAATTCAACATTGAGAAGCTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATT
EST: gi|5343244|gb|AI795549.1|AI795549
EST:     GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCTGAGGAG                         GAATTCAACATTGAGAAGCTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATT
genomic: GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAGgtcagttttc ... aaacttacagGAATTCAACATTGAGAAGCTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATT
EST: gi|211172984|gb|FL396044.1|FL396044
EST:     GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAG                         GAATTCAACATTGAGAAGCTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATT
genomic: GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAGgtcagttttc ... aaacttacagGAATTCAACATTGAGAAGCTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATT
EST: gi|5439481|gb|AI820402.1|AI820402
EST:     GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAG                         GAATTCAACATTGAGAAGCTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATT
genomic: GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAGgtcagttttc ... aaacttacagGAATTCAACATTGAGAAGCTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATT
EST: gi|211508535|gb|FL372233.1|FL372233
EST:     GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAG                         GAATTCAACATTGAGAAGCTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATT
genomic: GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAGgtcagttttc ... aaacttacagGAATTCAACATTGAGAAGCTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATT
EST: gi|67017910|gb|CO446659.1|CO446659
EST:     AGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAG                         GAATTCAACATTGAGAAGCTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATT
genomic: AGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAGgtcagttttc ... aaacttacagGAATTCAACATTGAGAAGCTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATT
EST: gi|5847170|gb|AW000249.1|AW000249
EST:     GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCTGAGGAG                         GAATTCAACATTGAGAAGCTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATT
genomic: GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAGgtcagttttc ... aaacttacagGAATTCAACATTGAGAAGCTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATT
EST: gi|149077234|gb|EE165904.2|EE165904
EST:     GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAG                         GAATTCAACATTGAGAAGCTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATT
genomic: GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAGgtcagttttc ... aaacttacagGAATTCAACATTGAGAAGCTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATT
EST: gi|91873822|gb|EB403779.1|EB403779
EST:     GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAG                         GAATTCAACATTGAGAAGCTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATT
genomic: GCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAGgtcagttttc ... aaacttacagGAATTCAACATTGAGAAGCTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 45 (upstream exon), 49 (downstream exon)
Score: 329

GAATGACGCCGATGTAGCCAAGCAGATCCAGCAGATGGTGCGGTTCATCCGCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAGgtcagttttc ... aaacttacagGAATTCAACATTGAGAAGCTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATTAGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAA


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 729

GAATGACGCCGATGTAGCCAAGCAGATCCAGCAGATGGTGCGGTTCATCCGCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAGgtcagttttc ... aaacttacagGAATTCAACATTGAGAAGCTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATTAGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 774

GAATGACGCCGATGTAGCCAAGCAGATCCAGCAGATGGTGCGGTTCATCCGCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAGgtcagttttc ... aaacttacagGAATTCAACATTGAGAAGCTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATTAGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 477

GAATGACGCCGATGTAGCCAAGCAGATCCAGCAGATGGTGCGGTTCATCCGCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAGgtcagttttc ... aaacttacagGAATTCAACATTGAGAAGCTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATTAGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAA




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgaccatttttctatgtgtcctcaattttaatttattttgtttaaaaacttacagGAATTCAACATTGAGAAGCTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATTAGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAA
                         ttttaat  putative branch site (score: 477)
                     tcaattttaatttatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tcggacagacaatttcacttatttttttatgtgcatacttgttaatgaccatttttctatgtgtcctcaattttaatttattttgtttaaaaacttacagGAATTCAACATTGAGAAGCTGCAGCTTGTTGAAGCTGAGAAAAAGAAGATTAGACAAGAGTATGAACGCAAAGAGAAGCAGGTTGAAGTACGGAAGAAAA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAA
- - - - - - - - - - - - - - - -tgcatac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttttgtt