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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacgtttcttgcccggagattagagctttggctctagatctctcttctccccgtttcctcgattggttcgggaccttccatacgaccaatttcgtggtgtatattggctgctgcctgtgttacagTGCGGGAGGATGTCGGAGCCTTCCAAGGTAATCCACATCCGCAACGTCGGGCACGAGATTGCCGAG

Basic information

species Zea mays
transcript GRMZM2G070113_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G070113_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os05g36120.2 (Oryza sativa), 3'ss of exon 1
--------------gtaacgtttcttgcccggagattagagctttggct-ctagatctctcttctccccg---------tttcctcgattggttcgggaccttc---catacgacc---aatttcgtggtgtatattggctg--ctgcc-tgtgttacagTGCGGG-AGGATGTCGGAGCCTTCCAAGGTAATCCACATCCGCAACGTCGGGCACGAGATTGCCGAG
                 ||||  ||   ||     | | | | ||  ||    |  | |||||| ||            ||  ||   |||||| || | ||||   | |  | ||   |  || ||   ||  |  ||  |  |||   |||| | | ||||||| |||||| ||||||| || ||||| ||||||||||| |||||||||||||| || || |||
gtgagcaccccgtacggacgtccctcttccttcc-tcacatccttctctatccgcaccctcttcgccttaaatcttatcttctcttctttggtttggaagcttctctcttttggccttaaccttagtacggttaacagGTAGACCTGTGGTGTGGTGCGGTGCGGGGAGGATGGCGGAGCCGTCTAAGGTGATCCACATCCGGAACGTCGGGCACGAAATCGCTGAG

upper sequence: GRMZM2G070113_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os05g36120.1 (Oryza sativa), 3'ss of exon 1
---gtaacgtttcttgcccggagattagagctttggctcta-gatctctcttctccccg---------tttcctcgattggttcgggaccttc---catacgacc---aatttcgtggtgtatattggctg--ctgcc-tgtgttacagTGCGGG-AGGATGTCGGAGCCTTCCAAGGTAATCCACATCCGCAACGTCGGGCACGAGATTGCCGAG
      ||||  ||   ||     | | | | ||  || |  |  | |||||| ||            ||  ||   |||||| || | ||||   | |  | ||   |  || ||   ||  |  ||  |  |||   |||| | | ||||||| |||||| ||||||| || ||||| ||||||||||| |||||||||||||| || || |||
gtacggacgtccctcttccttcc-tcacatccttctctatccgcaccctcttcgccttaaatcttatcttctcttctttggtttggaagcttctctcttttggccttaaccttagtacggttaacagGTAGACCTGTGGTGTGGTGCGGTGCGGGGAGGATGGCGGAGCCGTCTAAGGTGATCCACATCCGGAACGTCGGGCACGAAATCGCTGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211448116|gb|FL293418.1|FL293418
EST:     CAGTCGACGGCAAAACCCTAGATCCCTCTCCCTCTTAAACCCTCTACGAG                         TGCGGGAGGATGTCGGAGCCTTCCAAGGTAATCCACATCCGCAACGTCGGG
genomic: CAGTCGACGGCAAAACCCTAGATCCCTCTCCCTCTTAAACCCTCTACGAGgtaacgtttc ... tgtgttacagTGCGGGAGGATGTCGGAGCCTTCCAAGGTAATCCACATCCGCAACGTCGGG
EST: gi|31360867|gb|CD445224.1|CD445224
EST:     CAGTCGACGGCAAAACCCTAGATCTCTCTCCCTCTTAAACCCTCTACGAG                         TGCGGGAGGATGTCGGAGCCTTCCAAGGTAATCCACATCCGCAACGGCGGG
genomic: CAGTCGACGGCAAAACCCTAGATCCCTCTCCCTCTTAAACCCTCTACGAGgtaacgtttc ... tgtgttacagTGCGGGAGGATGTCGGAGCCTTCCAAGGTAATCCACATCCGCAACGTCGGG
EST: gi|211540185|gb|FL201610.1|FL201610
EST:     AGTCGACGGCAAAACCCTAGATCCCTCTCCCTCTTAAACCCTCTACGAG                         TGGGGGAGGATGTCGG
genomic: AGTCGACGGCAAAACCCTAGATCCCTCTCCCTCTTAAACCCTCTACGAGgtaacgtttc ... tgtgttacagTGCGGGAGGATGTCGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggaccttccatacgaccaatttcgtggtgtatattggctgctgcctgtgttacagTGCGGGAGGATGTCGGAGCCTTCCAAGGTAATCCACATCCGCAACGTCGGGCACGAGATTGCCGAG
                           tgtatatt  TA-rich tract