1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtcagtctttactctaccaatccgctgctgttgcaaccctgctcctgttgcccccttctctattgtagcagtaaccagtaactgcattggttcatgggcaacgggcggtaacctaatttaaccttattcttctgatgatctgtttctccaatgccctatgcatcattcgatccgttagATAAACAAGCGGGGTGAGACGGTGGACGAGAAGATCAAGAAGCTGGACGAGGAGCTAGCCAGGTACAAGGAGCAGATCCGCAAGACCCGCCCCGGCCCGT
species | Zea mays |
transcript | GRMZM2G069827_T03 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCAAGAAGGACAAGGGGCCGCCCCCCTCCATCCAGGACGCCACCGAGCGA ATAAACAAGCGGGGTGAGACGGTGGACGAGAAGATCAAGAAGCTGGACGAGEST: gi|211462343|gb|FK983884.1|FK983884
genomic: CCAAGAAGGACAAGGGGCCGCCCCCCTCCATCCAGGACGCCACCGAGCGAgtcagtcttt ... gatccgttagATAAACAAGCGGGGTGAGACGGTGGACGAGAAGATCAAGAAGCTGGACGAG
EST: CCAAGAAGGACAAGGGGCCGCCCCCCTCCATCCAGGACGCCACCGAGCGA ATAAACAAGCGGGGTGAGACGGTGGACGAGAAGATCAAGAAGCTGGACGAGEST: gi|211462347|gb|FK983888.1|FK983888
genomic: CCAAGAAGGACAAGGGGCCGCCCCCCTCCATCCAGGACGCCACCGAGCGAgtcagtcttt ... gatccgttagATAAACAAGCGGGGTGAGACGGTGGACGAGAAGATCAAGAAGCTGGACGAG
EST: CCAAGAAGGACAAGGGGCCGCCCCCCTCCATCCAGGACGCCACCGAGCGA ATAAACAAGCGGGGTGAGACGGTGGACGAGAAGATCAAGAAGCTGGACGAGEST: gi|76915903|gb|DV166159.1|DV166159
genomic: CCAAGAAGGACAAGGGGCCGCCCCCCTCCATCCAGGACGCCACCGAGCGAgtcagtcttt ... gatccgttagATAAACAAGCGGGGTGAGACGGTGGACGAGAAGATCAAGAAGCTGGACGAG
EST: CCAAGAAGGACAAGGGGCCGCCCCCCTCCATCCAGGACGCCACCGAGCGA ATAAACAAGCGGGGTGAGACGGTGGACGAGAAGATCAAGAAGCTGGACGAGEST: gi|211462341|gb|FK983882.1|FK983882
genomic: CCAAGAAGGACAAGGGGCCGCCCCCCTCCATCCAGGACGCCACCGAGCGAgtcagtcttt ... gatccgttagATAAACAAGCGGGGTGAGACGGTGGACGAGAAGATCAAGAAGCTGGACGAG
EST: CCAAGAAGGACAAGGGGCCGCCCCCCTCCATCCAGGACGCCACCGAGCGA ATAAACAAGCGGGGTGAGACGGTGGACGAGAAGATCAAGAAGCTGGACGAG
genomic: CCAAGAAGGACAAGGGGCCGCCCCCCTCCATCCAGGACGCCACCGAGCGAgtcagtcttt ... gatccgttagATAAACAAGCGGGGTGAGACGGTGGACGAGAAGATCAAGAAGCTGGACGAG
ttattcttctgatgatctgtttctccaatgccctatgcatcattcgatccgttagATAAACAAGCGGGGTGAGACGGTGGACGAGAAGATCAAGAAGCTGGACGAGGAGCTAGCCAGGTACAAGGAGCAGATCCGCAAGACCCGCCCCGGCCCGT
ttctgat putative branch site (score: 3)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagtctttactctaccaatccgctgctgttgcaaccctgctcctgttgcccccttctctattgtagcagtaaccagtaactgcattggttcatgggcaacgggcggtaacctaatttaaccttattcttctgatgatctgtttctccaatgccctatgcatcattcgatccgttagATAAACAAGCGGGGTGAGACGGTGGACGAGAAGATCAAGAAGCTGGACGAGGAGCTAGCCAGGTACAAGGAGCAGATCCGCAAGACCCGCCCCGGCCCGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA