1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tttgtcttggacttgctagatgatcagatgtttgcaagtgctaatattggacgtggtgatgccgttgagaattatgatgcaagtttttttccatcttcagAGAGGGAATGGATACATCAACCAAGGAAGGAGGAGGACAAATGATAGGTTGAGGCGTGCAGACAGAGAGGACAGCGTTAGGCGAACTGTTTATGTCTCTG
species | Zea mays |
transcript | GRMZM2G069816_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGGCCACCGACGATCCCTTTTACGTTGGGTTTGGGAACCAGCAGCGCAAG AGAGGGAATGGATACATCAACCAAGGAAGGAGGAGGACAAATGATAGGTTGEST: gi|37385479|gb|CF629884.1|CF629884
genomic: GGGCCACCGACGATCCCTTTTACGTTGGGTTTGGGAACCAGCAGCGCAAGgtatgatccg ... ccatcttcagAGAGGGAATGGATACATCAACCAAGGAAGGAGGAGGACAAATGATAGGTTG
EST: GGGCCACCGACGATCCCTTTTACGTTGGGTTTGGAAACCAGCAGCGCAAG AGAGGGAATGGATACATCAACCAAGGAAGGAGGAGGACTAATGATAGGTTGEST: gi|148948792|gb|EC894194.2|EC894194
genomic: GGGCCACCGACGATCCCTTTTACGTTGGGTTTGGGAACCAGCAGCGCAAGgtatgatccg ... ccatcttcagAGAGGGAATGGATACATCAACCAAGGAAGGAGGAGGACAAATGATAGGTTG
EST: GGGCCACCGACGATCCCTTTTACGTTGGGTTTGGGAACCAGCAGCGCAAG AGAGGGAATGGATACATCAACCAAGGAAGGAGGAGGACAAATGATAGGTTGEST: gi|211397568|gb|FL031684.1|FL031684
genomic: GGGCCACCGACGATCCCTTTTACGTTGGGTTTGGGAACCAGCAGCGCAAGgtatgatccg ... ccatcttcagAGAGGGAATGGATACATCAACCAAGGAAGGAGGAGGACAAATGATAGGTTG
EST: GGGCCACCGACGATCCCTTTTACGTTGGGTTTGGGAACCAGCAGCGCAAG AGAGGGAATGGATACATCAACCAAGGAAGGAGGAGGACAAATGATAGGTTGEST: gi|149097331|gb|EE183163.2|EE183163
genomic: GGGCCACCGACGATCCCTTTTACGTTGGGTTTGGGAACCAGCAGCGCAAGgtatgatccg ... ccatcttcagAGAGGGAATGGATACATCAACCAAGGAAGGAGGAGGACAAATGATAGGTTG
EST: GGGCCACCGACGATCCCTTTTACGTTGGGTTTGGGAACCAGCAGCGCAAG AGAGGGAATGGATACATCAACCAAGGAAGGAGGAGGACAAATGATAGGTTGEST: gi|78104074|gb|DV522492.1|DV522492
genomic: GGGCCACCGACGATCCCTTTTACGTTGGGTTTGGGAACCAGCAGCGCAAGgtatgatccg ... ccatcttcagAGAGGGAATGGATACATCAACCAAGGAAGGAGGAGGACAAATGATAGGTTG
EST: GGGCCACCGACGATCCCTTTTACGTTGGGTTTGGGAACCAGCAGCGCAAG AGAGGGAATGGATACATCAACCAAGGAAGGAGGAGGACAAATGATAGGTTGEST: gi|211397570|gb|FL031686.1|FL031686
genomic: GGGCCACCGACGATCCCTTTTACGTTGGGTTTGGGAACCAGCAGCGCAAGgtatgatccg ... ccatcttcagAGAGGGAATGGATACATCAACCAAGGAAGGAGGAGGACAAATGATAGGTTG
EST: GGGCCACCGACGATCCCTTTTACGTTGGGTYTGGGAACCAGCAGCGCAAG AGAGGGAATGGATACATCAACCAAGGAAGGAGGAGGACAAATGATAGGTTGEST: gi|149096648|gb|EE182414.2|EE182414
genomic: GGGCCACCGACGATCCCTTTTACGTTGGGTTTGGGAACCAGCAGCGCAAGgtatgatccg ... ccatcttcagAGAGGGAATGGATACATCAACCAAGGAAGGAGGAGGACAAATGATAGGTTG
EST: GGGCCACCGACGATCCCTTTTACGTTGGGTTTGGGAACCAGCAGCGCAAG AGAGGGAATGGATACATCAACCAAGGAAGGAGGAGGACAAATGATAGGTTG
genomic: GGGCCACCGACGATCCCTTTTACGTTGGGTTTGGGAACCAGCAGCGCAAGgtatgatccg ... ccatcttcagAGAGGGAATGGATACATCAACCAAGGAAGGAGGAGGACAAATGATAGGTTG
attggacgtggtgatgccgttgagaattatgatgcaagtttttttccatcttcagAGAGGGAATGGATACATCAACCAAGGAAGGAGGAGGACAAATGATAGGTTGAGGCGTGCAGACAGAGAGGACAGCGTTAGGCGAACTGTTTATGTCTCTG
tttttttccatcttc CT-rich tract
aagttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttgtcttggacttgctagatgatcagatgtttgcaagtgctaatattggacgtggtgatgccgttgagaattatgatgcaagtttttttccatcttcagAGAGGGAATGGATACATCAACCAAGGAAGGAGGAGGACAAATGATAGGTTGAGGCGTGCAGACAGAGAGGACAGCGTTAGGCGAACTGTTTATGTCTCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - -cttgcta
- - - - - - - - - - - - - - tgtttgc
- - - - - - - - - - - - - - - - - - - tgctaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atgcaag