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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cgatttttagggctcaatcctgtctgatccgttctcctcacttgtctgtttctgtgaaatttgtctcaacctgtttcggtttgtgctttggtctgaacagAGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCCAGGCGGCCAAG

Basic information

species Zea mays
transcript GRMZM2G069765_T05
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G069765_T02 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os06g34690.1 (Oryza sativa), 3'ss of exon 1
cgatttttagggctcaatcctgtctgatccgttctcc-tcacttgtctgtttctgtgaaatt-tgtctcaacctgtttcggtttgt---gctttggtctgaacagAGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCCAGGCGGCCAAG
    | |||||  |   || | ||||||| | || |  || |||   | | |  | ||| || | ||| |   ||||| | ||| |   | |||| | ||| ||||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||| ||||||
----tgttaggtttttgtcat-tctgatctgatccctgtcgcttccgtttatgcgggaacttctctctgattttgttttgtttttttttgttttgatttgagcagAGGACTCGCTGAAGCGGGAGTCCGGCACGAAGGTTCACCATGCCAACATCCAGGCCGCCAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149105498|gb|EE291023.2|EE291023
EST:     CTGCTGCCTCCACTTCACCATGGCGCTTCACGCCCCGGTCCTCGTTCTGA                         AGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
genomic: CTGCTGCCTCCACTTCACCATGGCGCTTCACGCCCCGGTCCTCGTTCTGAgtaagcgccc ... gtctgaacagAGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
EST: gi|60358233|gb|DN225206.1|DN225206
EST:     CTGCTGCCTCCACTTCACCATGGCGCTTCACGCCCCGGTCCTCGTTCTGA                         AGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
genomic: CTGCTGCCTCCACTTCACCATGGCGCTTCACGCCCCGGTCCTCGTTCTGAgtaagcgccc ... gtctgaacagAGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
EST: gi|211229383|gb|FL136771.1|FL136771
EST:     CTGCTGCCTCCACTTCACCATGGCGCTTCACGCCCCGGTCCTCGTTCTGA                         AGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
genomic: CTGCTGCCTCCACTTCACCATGGCGCTTCACGCCCCGGTCCTCGTTCTGAgtaagcgccc ... gtctgaacagAGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
EST: gi|149082543|gb|EE171738.2|EE171738
EST:     CTGCTGCCTCCACTTCACCATGGCGCTTCACGCCCCGGTCCTCGTTCTGA                         AGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
genomic: CTGCTGCCTCCACTTCACCATGGCGCTTCACGCCCCGGTCCTCGTTCTGAgtaagcgccc ... gtctgaacagAGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
EST: gi|78083040|gb|DV511433.1|DV511433
EST:     CTGCTGCCTCCACTTCACCATGGCGCTTCACGCCCCGGTCCTCGTTCTGA                         AGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
genomic: CTGCTGCCTCCACTTCACCATGGCGCTTCACGCCCCGGTCCTCGTTCTGAgtaagcgccc ... gtctgaacagAGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
EST: gi|211229393|gb|FL136781.1|FL136781
EST:     CTGCTGCCTCCACTTCACCATGGCGCTTCACGCCCCGGTCCTCGTTCTGA                         AGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
genomic: CTGCTGCCTCCACTTCACCATGGCGCTTCACGCCCCGGTCCTCGTTCTGAgtaagcgccc ... gtctgaacagAGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
EST: gi|211227330|gb|FL136768.1|FL136768
EST:     CTGCTGCCTCCACTTCACCATGGCGCTTCACGCCCCGGTCCTCGTTCTGA                         AGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
genomic: CTGCTGCCTCCACTTCACCATGGCGCTTCACGCCCCGGTCCTCGTTCTGAgtaagcgccc ... gtctgaacagAGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
EST: gi|33093832|gb|CF053826.1|CF053826
EST:     CTACTGCCTCCACTTCACCATGGCGCTTCACGCCCCGGTCCTCGTTCTGA                         AGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
genomic: CTGCTGCCTCCACTTCACCATGGCGCTTCACGCCCCGGTCCTCGTTCTGAgtaagcgccc ... gtctgaacagAGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
EST: gi|6021027|gb|AW065955.1|AW065955
EST:     CTGCTGCCTCCACTTCACCATGGCGCTTCACGCCCCGGTCCTCGTTCTGA                         AGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
genomic: CTGCTGCCTCCACTTCACCATGGCGCTTCACGCCCCGGTCCTCGTTCTGAgtaagcgccc ... gtctgaacagAGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
EST: gi|211231448|gb|FL136784.1|FL136784
EST:     CTGCTGCCTCCACTTCACCATGGCGCTTCACGCCCCGGTCCTCGTTCTGA                         AGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
genomic: CTGCTGCCTCCACTTCACCATGGCGCTTCACGCCCCGGTCCTCGTTCTGAgtaagcgccc ... gtctgaacagAGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
EST: gi|211229384|gb|FL136772.1|FL136772
EST:     CTGCTGCCTCCACTTCACCATGGCGCTTCACGCCCCGGTCCTCGTTCTGA                         AGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
genomic: CTGCTGCCTCCACTTCACCATGGCGCTTCACGCCCCGGTCCTCGTTCTGAgtaagcgccc ... gtctgaacagAGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
EST: gi|211229382|gb|FL136770.1|FL136770
EST:     CTGCTGCCTCCACTTCACCATGGCGCTTCACGCCCCGGTCCTCGTTCTGA                         AGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
genomic: CTGCTGCCTCCACTTCACCATGGCGCTTCACGCCCCGGTCCTCGTTCTGAgtaagcgccc ... gtctgaacagAGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
EST: gi|211231449|gb|FL136785.1|FL136785
EST:     CTGCTGCCTCCACTTCACCATGGCGCTTCACGCCCCGGTCCTCGTTCTGA                         AGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
genomic: CTGCTGCCTCCACTTCACCATGGCGCTTCACGCCCCGGTCCTCGTTCTGAgtaagcgccc ... gtctgaacagAGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
EST: gi|211231450|gb|FL136786.1|FL136786
EST:     CTGCTGCCTCCACTTCACCATGGCGCTTCACGCCCCGGTCCTCGTTCTGA                         AGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
genomic: CTGCTGCCTCCACTTCACCATGGCGCTTCACGCCCCGGTCCTCGTTCTGAgtaagcgccc ... gtctgaacagAGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
EST: gi|33097192|gb|CF057152.1|CF057152
EST:     CTGCTGCCTCCACTTCACCATGGCGCTTCACGCCCCGGTCCTCGTTCTGA                         AGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
genomic: CTGCTGCCTCCACTTCACCATGGCGCTTCACGCCCCGGTCCTCGTTCTGAgtaagcgccc ... gtctgaacagAGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
EST: gi|76014861|gb|DT942031.1|DT942031
EST:     CTGCTGCCTCCACTTCACCATGGCGCTTCACGCCCCGGTCCTCGTTCTGA                         AGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
genomic: CTGCTGCCTCCACTTCACCATGGCGCTTCACGCCCCGGTCCTCGTTCTGAgtaagcgccc ... gtctgaacagAGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
EST: gi|211229381|gb|FL136769.1|FL136769
EST:     CTGCTGCCTCCACTTCACCATGGCGCTTCACGCCCCGGTCCTCGTTCTGA                         AGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
genomic: CTGCTGCCTCCACTTCACCATGGCGCTTCACGCCCCGGTCCTCGTTCTGAgtaagcgccc ... gtctgaacagAGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
EST: gi|22491088|gb|BU051011.1|BU051011
EST:     CTGCTGCCTCCACTTCACCATGGCGCTTCACGCCCCGGTCCTCGTTCTGA                         AGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
genomic: CTGCTGCCTCCACTTCACCATGGCGCTTCACGCCCCGGTCCTCGTTCTGAgtaagcgccc ... gtctgaacagAGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
EST: gi|211229392|gb|FL136780.1|FL136780
EST:     CTGCTGCCTCCACTTCACCATGGCGCTTCACGCCCCGGTCCTCGTTCTGA                         AGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
genomic: CTGCTGCCTCCACTTCACCATGGCGCTTCACGCCCCGGTCCTCGTTCTGAgtaagcgccc ... gtctgaacagAGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
EST: gi|211229385|gb|FL136773.1|FL136773
EST:     CTGCTGCCTCCACTTCACCATGGCGCTTCACGCCCCGGTCCTCGTTCTGA                         AGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
genomic: CTGCTGCCTCCACTTCACCATGGCGCTTCACGCCCCGGTCCTCGTTCTGAgtaagcgccc ... gtctgaacagAGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
EST: gi|31357629|gb|CD441986.1|CD441986
EST:     CTGCTGCCTCCACTTCACCATGGCGCTTCACGCCCCGGTCCTCGTTCTGA                         AGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
genomic: CTGCTGCCTCCACTTCACCATGGCGCTTCACGCCCCGGTCCTCGTTCTGAgtaagcgccc ... gtctgaacagAGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
EST: gi|211231451|gb|FL136787.1|FL136787
EST:     CTGCTGCCTCCACTTCACCATGGCGCTTCACGCCCCGGTCCTCGTTCTGA                         AGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
genomic: CTGCTGCCTCCACTTCACCATGGCGCTTCACGCCCCGGTCCTCGTTCTGAgtaagcgccc ... gtctgaacagAGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
EST: gi|32865501|gb|CF005183.1|CF005183
EST:     CTGCTGCCTCCACTTCACCATGGCGCTTCACGCCCCGGTCCTCGTTCTGA                         AGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
genomic: CTGCTGCCTCCACTTCACCATGGCGCTTCACGCCCCGGTCCTCGTTCTGAgtaagcgccc ... gtctgaacagAGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
EST: gi|19351773|gb|BM896305.1|BM896305
EST:     CTGCTGCCTCCACTTCACCATGGCGCTTCACGCCCCGGTCCTCGTTCTGA                         AGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
genomic: CTGCTGCCTCCACTTCACCATGGCGCTTCACGCCCCGGTCCTCGTTCTGAgtaagcgccc ... gtctgaacagAGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
EST: gi|32908744|gb|CF013557.1|CF013557
EST:     CTGCTGCCTCCACTTCACCATGGCGCTTCACGCCCCGGTCCTCGTTCTGA                         AGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
genomic: CTGCTGCCTCCACTTCACCATGGCGCTTCACGCCCCGGTCCTCGTTCTGAgtaagcgccc ... gtctgaacagAGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
EST: gi|211229388|gb|FL136776.1|FL136776
EST:     CTGCTGCCTCCACTTCACCATGGCGCTTCACGCCCCGGTCCTCGTTCTGA                         AGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
genomic: CTGCTGCCTCCACTTCACCATGGCGCTTCACGCCCCGGTCCTCGTTCTGAgtaagcgccc ... gtctgaacagAGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
EST: gi|211229394|gb|FL136782.1|FL136782
EST:     CTGCTGCCTCCACTTCACCATGGCGCTTCACGCCCCGGTCCTCGTTCTGA                         AGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
genomic: CTGCTGCCTCCACTTCACCATGGCGCTTCACGCCCCGGTCCTCGTTCTGAgtaagcgccc ... gtctgaacagAGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
EST: gi|211229391|gb|FL136779.1|FL136779
EST:     CTGCTGCCTCCACTTCACCATGGCGCTTCACGCCCCGGTCCTCGTTCTGA                         AGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCAAACATCC
genomic: CTGCTGCCTCCACTTCACCATGGCGCTTCACGCCCCGGTCCTCGTTCTGAgtaagcgccc ... gtctgaacagAGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
EST: gi|87153647|gb|DY398436.1|DY398436
EST:     CTGCTGCCTCCACTTCACCATGGCGCTTCACGCCCCGGTCCTCGTTCTGA                         AGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
genomic: CTGCTGCCTCCACTTCACCATGGCGCTTCACGCCCCGGTCCTCGTTCTGAgtaagcgccc ... gtctgaacagAGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
EST: gi|31354825|gb|CD439182.1|CD439182
EST:     CTGCTGCCTCCACTTCACCATGGCGCTTCACGCCCCGGTCCTCGTTCTGA                         AGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
genomic: CTGCTGCCTCCACTTCACCATGGCGCTTCACGCCCCGGTCCTCGTTCTGAgtaagcgccc ... gtctgaacagAGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
EST: gi|211229386|gb|FL136774.1|FL136774
EST:     CTGCTGCCTCCACTTCACCATGGCGCTTCACGCCCCGGTCCTCGTTCTGA                         AGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
genomic: CTGCTGCCTCCACTTCACCATGGCGCTTCACGCCCCGGTCCTCGTTCTGAgtaagcgccc ... gtctgaacagAGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
EST: gi|31354522|gb|CD438879.1|CD438879
EST:     CTGCTGCCTCCACTTCACCATGGCGCTTCACGCCCCGGTCCTCGTTCTGA                         AGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
genomic: CTGCTGCCTCCACTTCACCATGGCGCTTCACGCCCCGGTCCTCGTTCTGAgtaagcgccc ... gtctgaacagAGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
EST: gi|148949761|gb|EC895244.2|EC895244
EST:     CTGCTGCCTCCACTTCACCATGGCGCTTCACGCCCCGGTCCTCGTTCTGA                         AGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
genomic: CTGCTGCCTCCACTTCACCATGGCGCTTCACGCCCCGGTCCTCGTTCTGAgtaagcgccc ... gtctgaacagAGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
EST: gi|31354218|gb|CD438575.1|CD438575
EST:     CTGCTGCCTCCACTTCACCATGGCGCTTCACGCCCCGGTCCTCGTTCTGA                         AGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
genomic: CTGCTGCCTCCACTTCACCATGGCGCTTCACGCCCCGGTCCTCGTTCTGAgtaagcgccc ... gtctgaacagAGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
EST: gi|149084479|gb|EE173941.2|EE173941
EST:     CTGCTGCCTCCACTTCACCATGGCGCTTCACGCCCCGGTCCTCGTTCTGA                         AGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
genomic: CTGCTGCCTCCACTTCACCATGGCGCTTCACGCCCCGGTCCTCGTTCTGAgtaagcgccc ... gtctgaacagAGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgtttctgtgaaatttgtctcaacctgtttcggtttgtgctttggtctgaacagAGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCCAGGCGGCCAAG
         tgaaattt  TA-rich tract