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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cgatttttagggctcaatcctgtctgatccgttctcctcacttgtctgtttctgtgaaatttgtctcaacctgtttcggtttgtgctttggtctgaacagAGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCCAGGCGGCCAAG

Basic information

species Zea mays
transcript GRMZM2G069765_T04
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G069765_T02 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os06g34690.1 (Oryza sativa), 3'ss of exon 1
cgatttttagggctcaatcctgtctgatccgttctcc-tcacttgtctgtttctgtgaaatt-tgtctcaacctgtttcggtttgt---gctttggtctgaacagAGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCCAGGCGGCCAAG
    | |||||  |   || | ||||||| | || |  || |||   | | |  | ||| || | ||| |   ||||| | ||| |   | |||| | ||| ||||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||| ||||||
----tgttaggtttttgtcat-tctgatctgatccctgtcgcttccgtttatgcgggaacttctctctgattttgttttgtttttttttgttttgatttgagcagAGGACTCGCTGAAGCGGGAGTCCGGCACGAAGGTTCACCATGCCAACATCCAGGCCGCCAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33093832|gb|CF053826.1|CF053826
EST:     CTACTGCCTCCACTTCACCATGGCGCTTCACGCCCCGGTCCTCGTTCTGA                         AGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
genomic: CTGCTGCCTCCACTTCACCATGGCGCTTCACGCCCCGGTCCTCGTTCTGAgtaagcgccc ... gtctgaacagAGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
EST: gi|6021027|gb|AW065955.1|AW065955
EST:     CTGCTGCCTCCACTTCACCATGGCGCTTCACGCCCCGGTCCTCGTTCTGA                         AGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
genomic: CTGCTGCCTCCACTTCACCATGGCGCTTCACGCCCCGGTCCTCGTTCTGAgtaagcgccc ... gtctgaacagAGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
EST: gi|211229393|gb|FL136781.1|FL136781
EST:     CTGCTGCCTCCACTTCACCATGGCGCTTCACGCCCCGGTCCTCGTTCTGA                         AGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
genomic: CTGCTGCCTCCACTTCACCATGGCGCTTCACGCCCCGGTCCTCGTTCTGAgtaagcgccc ... gtctgaacagAGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
EST: gi|211229384|gb|FL136772.1|FL136772
EST:     CTGCTGCCTCCACTTCACCATGGCGCTTCACGCCCCGGTCCTCGTTCTGA                         AGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
genomic: CTGCTGCCTCCACTTCACCATGGCGCTTCACGCCCCGGTCCTCGTTCTGAgtaagcgccc ... gtctgaacagAGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
EST: gi|211229382|gb|FL136770.1|FL136770
EST:     CTGCTGCCTCCACTTCACCATGGCGCTTCACGCCCCGGTCCTCGTTCTGA                         AGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
genomic: CTGCTGCCTCCACTTCACCATGGCGCTTCACGCCCCGGTCCTCGTTCTGAgtaagcgccc ... gtctgaacagAGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
EST: gi|78083040|gb|DV511433.1|DV511433
EST:     CTGCTGCCTCCACTTCACCATGGCGCTTCACGCCCCGGTCCTCGTTCTGA                         AGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
genomic: CTGCTGCCTCCACTTCACCATGGCGCTTCACGCCCCGGTCCTCGTTCTGAgtaagcgccc ... gtctgaacagAGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
EST: gi|211231449|gb|FL136785.1|FL136785
EST:     CTGCTGCCTCCACTTCACCATGGCGCTTCACGCCCCGGTCCTCGTTCTGA                         AGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
genomic: CTGCTGCCTCCACTTCACCATGGCGCTTCACGCCCCGGTCCTCGTTCTGAgtaagcgccc ... gtctgaacagAGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
EST: gi|211231451|gb|FL136787.1|FL136787
EST:     CTGCTGCCTCCACTTCACCATGGCGCTTCACGCCCCGGTCCTCGTTCTGA                         AGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
genomic: CTGCTGCCTCCACTTCACCATGGCGCTTCACGCCCCGGTCCTCGTTCTGAgtaagcgccc ... gtctgaacagAGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
EST: gi|211231448|gb|FL136784.1|FL136784
EST:     CTGCTGCCTCCACTTCACCATGGCGCTTCACGCCCCGGTCCTCGTTCTGA                         AGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
genomic: CTGCTGCCTCCACTTCACCATGGCGCTTCACGCCCCGGTCCTCGTTCTGAgtaagcgccc ... gtctgaacagAGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
EST: gi|211229392|gb|FL136780.1|FL136780
EST:     CTGCTGCCTCCACTTCACCATGGCGCTTCACGCCCCGGTCCTCGTTCTGA                         AGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
genomic: CTGCTGCCTCCACTTCACCATGGCGCTTCACGCCCCGGTCCTCGTTCTGAgtaagcgccc ... gtctgaacagAGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
EST: gi|31357629|gb|CD441986.1|CD441986
EST:     CTGCTGCCTCCACTTCACCATGGCGCTTCACGCCCCGGTCCTCGTTCTGA                         AGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
genomic: CTGCTGCCTCCACTTCACCATGGCGCTTCACGCCCCGGTCCTCGTTCTGAgtaagcgccc ... gtctgaacagAGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
EST: gi|32865501|gb|CF005183.1|CF005183
EST:     CTGCTGCCTCCACTTCACCATGGCGCTTCACGCCCCGGTCCTCGTTCTGA                         AGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
genomic: CTGCTGCCTCCACTTCACCATGGCGCTTCACGCCCCGGTCCTCGTTCTGAgtaagcgccc ... gtctgaacagAGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
EST: gi|32908744|gb|CF013557.1|CF013557
EST:     CTGCTGCCTCCACTTCACCATGGCGCTTCACGCCCCGGTCCTCGTTCTGA                         AGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
genomic: CTGCTGCCTCCACTTCACCATGGCGCTTCACGCCCCGGTCCTCGTTCTGAgtaagcgccc ... gtctgaacagAGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
EST: gi|211229391|gb|FL136779.1|FL136779
EST:     CTGCTGCCTCCACTTCACCATGGCGCTTCACGCCCCGGTCCTCGTTCTGA                         AGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCAAACATCC
genomic: CTGCTGCCTCCACTTCACCATGGCGCTTCACGCCCCGGTCCTCGTTCTGAgtaagcgccc ... gtctgaacagAGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
EST: gi|149082543|gb|EE171738.2|EE171738
EST:     CTGCTGCCTCCACTTCACCATGGCGCTTCACGCCCCGGTCCTCGTTCTGA                         AGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
genomic: CTGCTGCCTCCACTTCACCATGGCGCTTCACGCCCCGGTCCTCGTTCTGAgtaagcgccc ... gtctgaacagAGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgtttctgtgaaatttgtctcaacctgtttcggtttgtgctttggtctgaacagAGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCCAGGCGGCCAAG
         tgaaattt  TA-rich tract