1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...cgctaggcatatttttcaaactcacggcacaaagctagcgtcacttggaagagtacctatataaataacacccccttgctgccttgtgcttgcagaacagGGGGTTCAGACTTCTTGGTGAGAGCGATATGAGTGTCCCAGGTCAATGCTCATCCCAGCCACAATTTATCACCAGCGTTGGGAGGAGTAACCGCTCCAAT
species | Zea mays |
transcript | GRMZM2G069198_T04 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCCCCTCTGCTCTGCTTCGGCTCCTCACGCGGCCTCGCCGAGACCCGCAGAACAGEST: gi|211420191|gb|FL124229.1|FL124229
genomic: CCCCCTCTGCTCTGCTTCGGCTCCTCACGCGGCCTCGCCGAGA-CC-C-G--CAGgtacgccttc ... tgcaga
EST: CCCCCTCTGCTCTGCTTCGGCTCCTCACGCGGCCTCGCCGAGACCCGCAGAACAGEST: gi|211420190|gb|FL124228.1|FL124228
genomic: CCCCCTCTGCTCTGCTTCGGCTCCTCACGCGGCCTCGCCGAGA-CC-C-G--CAGgtacgccttc ... tgcaga
EST: CCCCTCTGCTCTGCGTTCGGCTCCTCACGCGGCCTCGCCGAGACCCGCAGAACAGEST: gi|93014188|gb|EB639708.1|EB639708
genomic: CCCCTCTGCTCTGC-TTCGGCTCCTCACGCGGCCTCGCCGAGA-CC-C-G--CAGgtacgccttc ... tgcaga
EST: CCCCCTCTGCTCTGCTTCGGCTCCTCACGCGGCCTCGCCGAGACCCGCAG GGGGTTCAGACTTCTTGGTGAGAGCGATATGAGTGTCCCAGGTCAATGCTC
genomic: CCCCCTCTGCTCTGCTTCGGCTCCTCACGCGGCCTCGCCGAGACCCGCAGgtacgccttc ... tgcagaacagGGGGTTCAGACTTCTTGGTGAGAGCGATATGAGTGTCCCAGGTCAATGCTC
tggaagagtacctatataaataacacccccttgctgccttgtgcttgcagaacagGGGGTTCAGACTTCTTGGTGAGAGCGATATGAGTGTCCCAGGTCAATGCTCATCCCAGCCACAATTTATCACCAGCGTTGGGAGGAGTAACCGCTCCAAT
aaataac putative branch site (score: 15)
tacctatataaataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgctaggcatatttttcaaactcacggcacaaagctagcgtcacttggaagagtacctatataaataacacccccttgctgccttgtgcttgcagaacagGGGGTTCAGACTTCTTGGTGAGAGCGATATGAGTGTCCCAGGTCAATGCTCATCCCAGCCACAATTTATCACCAGCGTTGGGAGGAGTAACCGCTCCAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - cacggca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aataaca