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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaacgtcccccttgatttggtcctgcccctcccccctgctcgcatcgattcccatttccgatgtctcctgctgacgattgtcgtgatgcgctcttctcgctgctgcctgcagAAGAAGGACGGAGCCGGAGGGTTCGGCGGCCACGGCCACGGCCACCCCGGCAGGCGGCGGACCAACAGCCGCACCAGCATGGCGCAGCGGGACGAGGCCA

Basic information

species Zea mays
transcript GRMZM2G069102_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G069102_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os08g02330.1 (Oryza sativa), 3'ss of exon 1
gtaagaacgtcccccttgatttggtcctgcccctcccccctgctcgcatcgattcccatttccgatgtctcctgctgacgattgtcgtgatgcgctcttctcgctgctgcctgcagAAGAAGGACGGAGCCGGAGGGTTCGGCGGCCACGGCCACGGCCACCCCGGCAGGCGGCGGACCAACAGCCGCACCAGCATGGCGCAGCGGGACGAGGCCA
|||| | |  ||  |    |  ||   |     || ||  | | |||  |   | |  || |   ||  ||   | |    | ||| | ||    |||  || | || |      |  | |||| ||||  |||||    ||   |   ||||| |||||| |||| | ||| ||||  |||||||||||||||||||||||||| ||||      
gtaacaccaaccaaccacctcaggagttttgtttcaccttttcccgcggcttctgctgttcctcctgattctcac-gctcttcgtc-tcatctcttctcttctccgcagAAGAAGGGCGGAGGA-GGAGGTGGAGGAGGAGGGTTCGGTGGCCAGGGCCACGCCGGGAAGCGCCGGATGAACAGCCGCACCAGCATGGCGCAGCGCGACG------


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccgatgtctcctgctgacgattgtcgtgatgcgctcttctcgctgctgcctgcagAAGAAGGACGGAGCCGGAGGGTTCGGCGGCCACGGCCACGGCCACCCCGGCAGGCGGCGGACCAACAGCCGCACCAGCATGGCGCAGCGGGACGAGGCCA
           tgctgac  putative branch site (score: 2)
                                 ctcttctcgctgct  putative PPT