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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgcttgccgcccggtccgacctcgtccacgtaactgggggctccgctgcgtccgtgggggtttcgccgctctgcttttgcccactcactcgctagggttttggatctccgatgcgactgcttggacccggcgtgtgctgctgaccgtgctgttgacgtggatgctttcgcagACTCGATGCGGAGGCTGGGGCTCGGCGACGACGGGGAAGCAGGGGAGGAGAAGCTTCCGGAGCGGCCGGGCGAGGCGGACTGCGCCTACTACCTCCGCAC

Basic information

species Zea mays
transcript GRMZM2G069009_T02
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148942067|gb|EC887066.2|EC887066
EST:     GGCGGCGAAGAGCGGCGGGGCCGACGCCGGCACCGGCACCGGACTGGAAG                         ACTCGATGCGGAGGCTGGGGCTCGGCGACGACGGGGAAGCAGGGGAGGAGA
genomic: GGCGGCGAAGAGCGGCGGGGCCGACGCCGGCACCGGCACCGGACTGGAAGgtacgcttgc ... gctttcgcagACTCGATGCGGAGGCTGGGGCTCGGCGACGACGGGGAAGCAGGGGAGGAGA
EST: gi|78082860|gb|DV511253.1|DV511253
EST:     GGCGGCGAAGAGCGGCGGGGCCGACGCCGGCACCGGCACCGGACTGGAAG                         ACTCGATGCGGAGGCTGGGGCTCGGCGACGACGGGGAAGCAGGGGAGGAGA
genomic: GGCGGCGAAGAGCGGCGGGGCCGACGCCGGCACCGGCACCGGACTGGAAGgtacgcttgc ... gctttcgcagACTCGATGCGGAGGCTGGGGCTCGGCGACGACGGGGAAGCAGGGGAGGAGA
EST: gi|78082473|gb|DV510885.1|DV510885
EST:     GGCGGCGAAGAGCGGCGGGGCCGACGCCGGCACCGGCACCGGACTGGAAG                         ACTCGATGCGGAGGCTGGGGCTCGGCGACGACGGGGAAGCAGGGGAGGAGA
genomic: GGCGGCGAAGAGCGGCGGGGCCGACGCCGGCACCGGCACCGGACTGGAAGgtacgcttgc ... gctttcgcagACTCGATGCGGAGGCTGGGGCTCGGCGACGACGGGGAAGCAGGGGAGGAGA
EST: gi|76286604|gb|DV026172.1|DV026172
EST:     GGCGGCGAAGAGCGGCGGGGCCGACGCCGGCACCGGCACCGGACTGGAAG                         ACTCGATGCGGAGGCTGGGGCTCGGCGACGACGGGGAAGCAGGGGAGGAGA
genomic: GGCGGCGAAGAGCGGCGGGGCCGACGCCGGCACCGGCACCGGACTGGAAGgtacgcttgc ... gctttcgcagACTCGATGCGGAGGCTGGGGCTCGGCGACGACGGGGAAGCAGGGGAGGAGA
EST: gi|149102933|gb|EE288285.2|EE288285
EST:     GGCGGCGAAGAGCGGCGGGGCCGACGCCGGCACCGGCACCGGACTGGAAG                         ACTCGATGCGGAGGCTGGGGCTCGGCGACGACGGGGAAGCAGGGGAGGAGA
genomic: GGCGGCGAAGAGCGGCGGGGCCGACGCCGGCACCGGCACCGGACTGGAAGgtacgcttgc ... gctttcgcagACTCGATGCGGAGGCTGGGGCTCGGCGACGACGGGGAAGCAGGGGAGGAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcttggacccggcgtgtgctgctgaccgtgctgttgacgtggatgctttcgcagACTCGATGCGGAGGCTGGGGCTCGGCGACGACGGGGAAGCAGGGGAGGAGAAGCTTCCGGAGCGGCCGGGCGAGGCGGACTGCGCCTACTACCTCCGCAC
                                            tgctttc  CT-rich tract