1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gccttttcctactggaactgcagtactttgaacatgctttttgcaaatacttgcactaaggatgaataaaatgttaagcaacgactgtttagggacacagGAGCCTCATACATTTTGCAAGACCACTGAAACACTGGAACATTCACACCCTCAAGAGGTTACACTTGATAAAACGGTGGCGGGGTCAACGCTAATAAGTC
species | Zea mays |
transcript | GRMZM2G068690_T04 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GTGCTGTGCTCAGCCAGAGGTCATCGGCGCTACGCGAGCGCACTGCCTGT GEST: gi|71430393|gb|DR811443.1|DR811443
genomic: GTGCTGTGCTCAGCCAGAGGTCATCGGCGCTACGCGAGCGCACTGCCTGTgtacgtatct ... agggacacag-
EST: GTGCTGTGCTCAGCCAGAGGTCATCGGCGCTACGCGAGCGCACTGCCTGT GEST: gi|71430393|gb|DR811443.1|DR811443
genomic: GTGCTGTGCTCAGCCAGAGGTCATCGGCGCTACGCGAGCGCACTGCCTGTgtacgtatct ... agggacacag-
EST: GTGCTGTGCTCAGCCAGAGGTCATCGGCGCTACGCGAGCGCACTGCCTGT GEST: gi|71430393|gb|DR811443.1|DR811443
genomic: GTGCTGTGCTCAGCCAGAGGTCATCGGCGCTACGCGAGCGCACTGCCTGTgtacgtatct ... agggacacag-
EST: GTGCTGTGCTCAGCCAGAGGTCATCGGCGCTACGCGAGCGCACTGCCTGT GEST: gi|71430393|gb|DR811443.1|DR811443
genomic: GTGCTGTGCTCAGCCAGAGGTCATCGGCGCTACGCGAGCGCACTGCCTGTgtacgtatct ... agggacacag-
EST: GTGCTGTGCTCAGCCAGAGGTCATCGGCGCTACGCGAGCGCACTGCCTGT GEST: gi|71430393|gb|DR811443.1|DR811443
genomic: GTGCTGTGCTCAGCCAGAGGTCATCGGCGCTACGCGAGCGCACTGCCTGTgtacgtatct ... agggacacag-
EST: GTGCTGTGCTCAGCCAGAGGTCATCGGCGCTACGCGAGCGCACTGCCTGT GEST: gi|71430393|gb|DR811443.1|DR811443
genomic: GTGCTGTGCTCAGCCAGAGGTCATCGGCGCTACGCGAGCGCACTGCCTGTgtacgtatct ... agggacacag-
EST: GTGCTGTGCTCAGCCAGAGGTCATCGGCGCTACGCGAGCGCACTGCCTGT GEST: gi|71430393|gb|DR811443.1|DR811443
genomic: GTGCTGTGCTCAGCCAGAGGTCATCGGCGCTACGCGAGCGCACTGCCTGTgtacgtatct ... agggacacag-
EST: GTGCTGTGCTCAGCCAGAGGTCATCGGCGCTACGCGAGCGCACTGCCTGT GEST: gi|71430393|gb|DR811443.1|DR811443
genomic: GTGCTGTGCTCAGCCAGAGGTCATCGGCGCTACGCGAGCGCACTGCCTGTgtacgtatct ... agggacacag-
EST: GTGCTGTGCTCAGCCAGAGGTCATCGGCGCTACGCGAGCGCACTGCCTGT GEST: gi|93281796|gb|EB674060.1|EB674060
genomic: GTGCTGTGCTCAGCCAGAGGTCATCGGCGCTACGCGAGCGCACTGCCTGTgtacgtatct ... agggacacag-
EST: GTGCTGTGCTCAGCCAGAGGTCATCGGCGCTACGCGAGCGCACTGCCTGT GEST: gi|93281796|gb|EB674060.1|EB674060
genomic: GTGCTGTGCTCAGCCAGAGGTCATCGGCGCTACGCGAGCGCACTGCCTGTgtacgtatct ... agggacacag-
EST: GTGCTGTGCTCAGCCAGAGGTCATCGGCGCTACGCGAGCGCACTGCCTGT GEST: gi|93281796|gb|EB674060.1|EB674060
genomic: GTGCTGTGCTCAGCCAGAGGTCATCGGCGCTACGCGAGCGCACTGCCTGTgtacgtatct ... agggacacag-
EST: GTGCTGTGCTCAGCCAGAGGTCATCGGCGCTACGCGAGCGCACTGCCTGT GEST: gi|93281796|gb|EB674060.1|EB674060
genomic: GTGCTGTGCTCAGCCAGAGGTCATCGGCGCTACGCGAGCGCACTGCCTGTgtacgtatct ... agggacacag-
EST: GTGCTGTGCTCAGCCAGAGGTCATCGGCGCTACGCGAGCGCACTGCCTGT GEST: gi|93281796|gb|EB674060.1|EB674060
genomic: GTGCTGTGCTCAGCCAGAGGTCATCGGCGCTACGCGAGCGCACTGCCTGTgtacgtatct ... agggacacag-
EST: GTGCTGTGCTCAGCCAGAGGTCATCGGCGCTACGCGAGCGCACTGCCTGT GEST: gi|93281796|gb|EB674060.1|EB674060
genomic: GTGCTGTGCTCAGCCAGAGGTCATCGGCGCTACGCGAGCGCACTGCCTGTgtacgtatct ... agggacacag-
EST: GTGCTGTGCTCAGCCAGAGGTCATCGGCGCTACGCGAGCGCACTGCCTGT GEST: gi|93281796|gb|EB674060.1|EB674060
genomic: GTGCTGTGCTCAGCCAGAGGTCATCGGCGCTACGCGAGCGCACTGCCTGTgtacgtatct ... agggacacag-
EST: GTGCTGTGCTCAGCCAGAGGTCATCGGCGCTACGCGAGCGCACTGCCTGT GEST: gi|93281796|gb|EB674060.1|EB674060
genomic: GTGCTGTGCTCAGCCAGAGGTCATCGGCGCTACGCGAGCGCACTGCCTGTgtacgtatct ... agggacacag-
EST: GTGCTGTGCTCAGCCAGAGGTCATCGGCGCTACGCGAGCGCACTGCCTGT GEST: gi|93281796|gb|EB674060.1|EB674060
genomic: GTGCTGTGCTCAGCCAGAGGTCATCGGCGCTACGCGAGCGCACTGCCTGTgtacgtatct ... agggacacag-
EST: GTGCTGTGCTCAGCCAGAGGTCATCGGCGCTACGCGAGCGCACTGCCTGT G
genomic: GTGCTGTGCTCAGCCAGAGGTCATCGGCGCTACGCGAGCGCACTGCCTGTgtacgtatct ... agggacacag-
aatacttgcactaaggatgaataaaatgttaagcaacgactgtttagggacacagGAGCCTCATACATTTTGCAAGACCACTGAAACACTGGAACATTCACACCCTCAAGAGGTTACACTTGATAAAACGGTGGCGGGGTCAACGCTAATAAGTC
atgaataaaatgttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gccttttcctactggaactgcagtactttgaacatgctttttgcaaatacttgcactaaggatgaataaaatgttaagcaacgactgtttagggacacagGAGCCTCATACATTTTGCAAGACCACTGAAACACTGGAACATTCACACCCTCAAGAGGTTACACTTGATAAAACGGTGGCGGGGTCAACGCTAATAAGTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - -cctactg
- - - - - - - - actgcag
- - - - - - - - - - - - - - - -acatgct
- - - - - - - - - - - - - - - - - - - ttttgca
- - - - - - - - - - - - - - - - - - - - - - - -tacttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aataaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagcaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -actgttt