Sequence
atgc intronic sequence ATGC exonic sequence...aacagttggccttttcctactggaactgcagtactttgaacatgctttttgcaaatacttgcactaaggatgaataaaatgttaagcaacgactgtttagGGACACAGGAGCCTCATACATTTTGCAAGACCACTGAAACACTGGAACATTCACACCCTCAAGAGGTTACACTTGATAAAACGGTGGCGGGGTCAACGCT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G068690_T03 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os01g43870.4 (Oryza sativa), 3'ss of exon 1
aacagttggccttttcctactggaactgcagtactttgaacatgctttttgcaaatacttgcactaaggatgaataaaatgttaagcaacgactgtttagGGACACAGGAGCCTCATACATTTTGCAAGACCACTGAAACACTGGAACATTCACACCCTCAAGAGGTTACACTTGATAAAACGGTGGCGGGGTCAACGCT
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aacagttggacttttcctactggaactgcagtactttcaacatgctttttgcaaatgcctgcattaaggatgaataaaatgttaagcaccgactatttagGGACGCAGGAGCTTCATTCATTTTGCAAGACCACCGAAATATTGGAAGACTCACAGTCTCAAGAGATTGCACTCGATAGAACAGCGGTGGGGTCAACACT
upper sequence: GRMZM2G068690_T03 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os01g43870.5 (Oryza sativa), 3'ss of exon 1
aacagttggccttttcctactggaactgcagtactttgaacatgctttttgcaaatacttgcactaaggatgaataaaatgttaagcaacgactgtttagGGACACAGGAGCCTCATACATTTTGCAAGACCACTGAAACACTGGAACATTCACACCCTCAAGAGGTTACACTTGATAAAACGGTGGCGGGGTCAACGCT--------
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--------gacttttcctactggaactgcagtactttcaacatgctttttgcaaatgcctgcattaaggatgaataaaatgttaagcaccgactatttagggacgcagGAGCTTCATTCATTTTGCAAGACCACCGAAATATTGGAAGACTCACAGTCTCAAGAGATTGCACTCGATAGAACAGCGGTGGGGTCAACACTTCTAAGTC
upper sequence: GRMZM2G068690_T03 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os01g43870.1 (Oryza sativa), 3'ss of exon 1
-----------------------------------------------------------------------------------------------aacagttggccttttcctactggaactgcagtactttgaacatgctttttgcaaatacttgcactaaggatgaataaaatgttaagcaacgactgtttagGGACACAGGAGCCTCATACATTTTGCAAGACCACTGAAACACTGGAACATTCACACCCTCAAGAGGTTACACTTGATAAAACGGTGGCGGGGTCAACGCT
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gggtaaagtatgttcttccagtagatcattagtctgtagatattttaccagcttcacttttctccactaatgtctttagtgatatcaaatgtttcaacagTTGGACTTTTCCTACTGGAACTGCAGTACTTTCAACATGCTTTTTGCAAATGCCTGCATTAAGGATGAATAAAATGTTAAGCACCGACTATTTAGGGACG-----------------------------------------------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71430393|gb|DR811443.1|DR811443EST: GTGCTGTGCTCAGCCAGAGGTCATCGGCGCTACGCGAGCGCACTGCCTGT GGACACAGGAGCCTCATACATTTTGCAAGACCACTGAAACACTGGAACATT
genomic: GTGCTGTGCTCAGCCAGAGGTCATCGGCGCTACGCGAGCGCACTGCCTGTgtacgtatct ... gactgtttagGGACACAGGAGCCTCATACATTTTGCAAGACCACTGAAACACTGGAACATT
EST:
gi|93281796|gb|EB674060.1|EB674060EST: GTGCTGTGCTCAGCCAGAGGTCATCGGCGCTACGCGAGCGCACTGCCTGT GGACACAGGAGCCTCATACATTTTGCAAGACCACTGAAACACTGGAACATT
genomic: GTGCTGTGCTCAGCCAGAGGTCATCGGCGCTACGCGAGCGCACTGCCTGTgtacgtatct ... gactgtttagGGACACAGGAGCCTCATACATTTTGCAAGACCACTGAAACACTGGAACATT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttttgcaaatacttgcactaaggatgaataaaatgttaagcaacgactgtttagGGACACAGGAGCCTCATACATTTTGCAAGACCACTGAAACACTGGAACATTCACACCCTCAAGAGGTTACACTTGATAAAACGGTGGCGGGGTCAACGCT
atgaataaaatgttaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aacagttggccttttcctactggaactgcagtactttgaacatgctttttgcaaatacttgcactaaggatgaataaaatgttaagcaacgactgtttagGGACACAGGAGCCTCATACATTTTGCAAGACCACTGAAACACTGGAACATTCACACCCTCAAGAGGTTACACTTGATAAAACGGTGGCGGGGTCAACGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - -cctactg
- - - - - - - - - - - - actgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - -tacttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aataaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagcaac