Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactcctcgtcttcctcccgagtcctcctccggattcgatgttcgtctcctgatttattggtggaaccgcagGTGACTAGGAGCAGTAGCGAGAGGGATTCTGGATGGCCAAGTCGAAGAACCACACGGCGCATAACCAGTCGTTCAAGGCGCACAAGAACGGCATCAAGAA

Basic information

species Zea mays
transcript GRMZM2G068496_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G068496_T02 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA15G15320.1 (Glycine max), 3'ss of exon 1
----gtactcctcgtcttcctcccgagtcctcctccggattcgatgttcgtctcctgatttattggtggaaccgcagGTGACTAGGAGCAGTAGCGAGAGGGATTCTGGATGGCCAAGTCGAAGAACCACACGGCGCATAACCAGTCGTTCAAGGCGCACAAGAACGGCATCAAGAA------------------------------
    |||       | |   |  | | |  || ||    || |   || ||    |  |||        | |  |   | | |  |  |  |         ||     |||||| ||||| ||||| ||||| ||||| || ||||| | |||||| ||||| ||||||||||||||                              
gttcgtatcttcaatttctgtaacaaat--tcttctaattttgcgctttgttctattctttcccttctcatcgtcctttcattttgctctattttattgcagA-----GATGGCAAAGTCTAAGAATCACACAGCGCACAATCAGTCCTACAAGGCCCACAAAAACGGCATCAAGAAACCCAAGAGGCATCGCCACACTTCCACCAA

upper sequence: GRMZM2G068496_T02 (Zea mays), 3'ss of exon 1
lower sequence: PP1S79_253V6.2 (Physcomitrella patens), 3'ss of exon 1
----gta-ctcctcgtcttcctcccgagtcctcct---ccggattcgatgttcgtctcctgatttattggtggaaccgcagGTGACTAGGAGCAGTAGCGAGAGGGATTCTGGATGGCCAAGTCGAAGAACCACACGGCGCATAACCAGTCGTTCAAGGCGCACAAGAACGGCATCAAGAA---------------------------
     ||  | || || |  |  | | | || |     | ||  | | ||||| |||   | | | ||| | ||    | | |   |  | |   | |    ||| |     |||||| ||||| ||||||||||| ||||| |||||||| | ||||   |||||||| || ||||||||                           
agcaatagtttctagtgtggcagctgtggccccagggactggtgttgttgttcctctgtcggtgtcttgattga----ctgatttttctgtggttttgtagcagGTA----AGATGGCGAAGTCCAAGAACCACACTGCGCACAACCAGTCCTACAAGAACCACAAGAATGGTATCAAGAAGGTTAAGAAGCATAAATACATCTCAAG

upper sequence: GRMZM2G068496_T02 (Zea mays), 3'ss of exon 1
lower sequence: PP1S79_253V6.1 (Physcomitrella patens), 3'ss of exon 1
-------gta-ctcctcgtcttcctcccgagtcctcct---ccggattcgatgttcgtctcctgatttattggtggaaccgcagGTGACTAGGAGCAGTAGCGAGAGGGATTCTGGATGGCCAAGTCGAAGAACCACACGGCGCATAACCAGTCGTTCAAGGCGCACAAGAACGGCATCAAGAA------------------------
        ||  | || || |  |  | | | || |     | ||  | | ||||| |||   | | | ||| | ||    | | |   |  | |   | |    ||| |     |||||| ||||| ||||||||||| ||||| |||||||| | ||||   |||||||| || ||||||||                        
tgcagcaatagtttctagtgtggcagctgtggccccagggactggtgttgttgttcctctgtcggtgtcttgattga----ctgatttttctgtggttttgtagCAGGTA----AGATGGCGAAGTCCAAGAACCACACTGCGCACAACCAGTCCTACAAGAACCACAAGAATGGTATCAAGAAGGTTAAGAAGCATAAATACATCTC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16927455|gb|BM080519.1|BM080519
EST:     CACGCCGCCACTGATCTGCTCTGTTGCTG                         GTGACTAGGAGCAGTAGCGAGAGGGATTCTGGATGGCCAAGTCGAAGAACC
genomic: CACGCCGCCACTGATCTGCTCTGTTGCTGgtactcctcg ... ggaaccgcagGTGACTAGGAGCAGTAGCGAGAGGGATTCTGGATGGCCAAGTCGAAGAACC
EST: gi|4609951|gb|AI600790.1|AI600790
EST:     CACTGATCTGCTCTGTTGCTG                         GTGACTAGGAGCAGTAGCGAGAGGGATTCTGGATGGCCAAGTCGAAGAACC
genomic: CACTGATCTGCTCTGTTGCTGgtactcctcg ... ggaaccgcagGTGACTAGGAGCAGTAGCGAGAGGGATTCTGGATGGCCAAGTCGAAGAACC
EST: gi|211076331|gb|FL151811.1|FL151811
EST:     AACACTCATCACGCCGCCACTGATCTGCTCTGTTGCTG                         GTGACTAGGAGCAGTAGCGAGAGGGATTCTGGATGGCCAAGTCGAAGAACC
genomic: AACACTCATCACGCCGCCACTGATCTGCTCTGTTGCTGgtactcctcg ... ggaaccgcagGTGACTAGGAGCAGTAGCGAGAGGGATTCTGGATGGCCAAGTCGAAGAACC
EST: gi|211081808|gb|FL151839.1|FL151839
EST:     ACCCTAACACTCATCACGCCGCCACTGATCTGCTCTGTTGCTG                         GTGACTAGGAGCAGTAGCRG-GAGGGATTCTGGATGGCCAAGTCGAAGAAC
genomic: ACCCTAACACTCATCACGCCGCCACTGATCTGCTCTGTTGCTGgtactcctcg ... ggaaccgcagGTGACTAGGAGCAGTAGC-GAGAGGGATTCTGGATGGCCAAGTCGAAGAAC
EST: gi|211076325|gb|FL151805.1|FL151805
EST:     AGAAACCCTAACACTCATCACGCCGCCACTGATCTGCTCTGTTGCTG                         GTGACTAGGAGCAGTAGCGAGAGGGATTCTGGATGGCCAAGTCGAAGAACC
genomic: AGAAACCCTAACACTCATCACGCCGCCACTGATCTGCTCTGTTGCTGgtactcctcg ... ggaaccgcagGTGACTAGGAGCAGTAGCGAGAGGGATTCTGGATGGCCAAGTCGAAGAACC
EST: gi|211076335|gb|FL151815.1|FL151815
EST:     AAACCCTAACACTCATCACGCCGCCACTGATCTGCTCTGTTGCTG                         GTGACTAGGAGCAGTAGCGAGAGGGATTCTGGATGGCCAAGTCGAAGAACC
genomic: AAACCCTAACACTCATCACGCCGCCACTGATCTGCTCTGTTGCTGgtactcctcg ... ggaaccgcagGTGACTAGGAGCAGTAGCGAGAGGGATTCTGGATGGCCAAGTCGAAGAACC
EST: gi|211084547|gb|FL151852.1|FL151852
EST:     AAACCCTAACACTCATCACGCCGCCACTGATCTGCTCTGTTGCTG                         GTGACTAGGAGCAGTAGCGAGAGGGATTCTGGATGGCCAAGTCGAAGAACC
genomic: AAACCCTAACACTCATCACGCCGCCACTGATCTGCTCTGTTGCTGgtactcctcg ... ggaaccgcagGTGACTAGGAGCAGTAGCGAGAGGGATTCTGGATGGCCAAGTCGAAGAACC
EST: gi|211079079|gb|FL151829.1|FL151829
EST:     AGAAACCCTAACACTCATCACGCCGCCACTGATCTGCTCTGTTGCTG                         GTGACTAGGAGCAGTAGC-RGAGGGATTCTGGATGGCCAAGTCGAAGAACC
genomic: AGAAACCCTAACACTCATCACGCCGCCACTGATCTGCTCTGTTGCTGgtactcctcg ... ggaaccgcagGTGACTAGGAGCAGTAGCGAGAGGGATTCTGGATGGCCAAGTCGAAGAACC
EST: gi|211084546|gb|FL151851.1|FL151851
EST:     AACACTCATCACGCCGCCACTGATCTGCTCTGTTGCTG                         GTGACTAGGAGCAGTAGCGAGAGGGATTCTGGATGGCCAAGTCGAAGAACC
genomic: AACACTCATCACGCCGCCACTGATCTGCTCTGTTGCTGgtactcctcg ... ggaaccgcagGTGACTAGGAGCAGTAGCGAGAGGGATTCTGGATGGCCAAGTCGAAGAACC
EST: gi|211076327|gb|FL151807.1|FL151807
EST:     AACACTCATCACGCCGCCACTGATCTGCTCTTTTGCTG                         GTGACTAGGAGCAGTAGCGAGAGGGATTCTGGATGGCCAAGTCGAAGAACC
genomic: AACACTCATCACGCCGCCACTGATCTGCTCTGTTGCTGgtactcctcg ... ggaaccgcagGTGACTAGGAGCAGTAGCGAGAGGGATTCTGGATGGCCAAGTCGAAGAACC
EST: gi|211076333|gb|FL151813.1|FL151813
EST:     AGAAACCCTAACACTCATCACGCCGCCACTGATCTGCTCTGTTGCTG                         GTGACTAGGAGCAGTAGCGAGAGGGATTCTGGATGGCCAAGTCGAAGAACC
genomic: AGAAACCCTAACACTCATCACGCCGCCACTGATCTGCTCTGTTGCTGgtactcctcg ... ggaaccgcagGTGACTAGGAGCAGTAGCGAGAGGGATTCTGGATGGCCAAGTCGAAGAACC
EST: gi|211081806|gb|FL151837.1|FL151837
EST:     AGAAACCCTAACACTCATCACGCCGCCACTGATCTGCTCTGTTGCTG                         GTGACTAGGAGCAGTAGCGAGAGGGATTCTGGATGGCCAAGTCGAAGAACC
genomic: AGAAACCCTAACACTCATCACGCCGCCACTGATCTGCTCTGTTGCTGgtactcctcg ... ggaaccgcagGTGACTAGGAGCAGTAGCGAGAGGGATTCTGGATGGCCAAGTCGAAGAACC
EST: gi|211084545|gb|FL151850.1|FL151850
EST:     ATCACGCCGCCACTGATCTGCTCTGTTGCTG                         GTGACTAGGAGCAGTAGCGAGAGGGATTCTGGATGGCCAAGTCGAAGAACC
genomic: ATCACGCCGCCACTGATCTGCTCTGTTGCTGgtactcctcg ... ggaaccgcagGTGACTAGGAGCAGTAGCGAGAGGGATTCTGGATGGCCAAGTCGAAGAACC
EST: gi|9730959|gb|BE509711.1|BE509711
EST:     GCCGCCACTGATCTGCTCTGTTGCTG                         GTGACTAGGAGCAGTAGCGAGAGGGATTCTGGATGGCCAAGTCGAAGAACC
genomic: GCCGCCACTGATCTGCTCTGTTGCTGgtactcctcg ... ggaaccgcagGTGACTAGGAGCAGTAGCGAGAGGGATTCTGGATGGCCAAGTCGAAGAACC
EST: gi|211079067|gb|FL151817.1|FL151817
EST:     AGAAACCCTAACACTCATCACGCCGCCACTGATCTGCTCTGTTGCTG                         GTGACTAGGAGCAGTAGCGAGAGGGATTCTGGATGGCCAAGTCGAAGAACC
genomic: AGAAACCCTAACACTCATCACGCCGCCACTGATCTGCTCTGTTGCTGgtactcctcg ... ggaaccgcagGTGACTAGGAGCAGTAGCGAGAGGGATTCTGGATGGCCAAGTCGAAGAACC
EST: gi|87155320|gb|DY400109.1|DY400109
EST:     CGCCGCCACTGATCTGCTCTGTTGCTG                         GTGACTAGGAGCAGTAGCGAGAGGGATTCTGGATGGCCAAGTCGAAGAACC
genomic: CGCCGCCACTGATCTGCTCTGTTGCTGgtactcctcg ... ggaaccgcagGTGACTAGGAGCAGTAGCGAGAGGGATTCTGGATGGCCAAGTCGAAGAACC
EST: gi|211084553|gb|FL151858.1|FL151858
EST:     AAACCCTAACACTCATCACGCCGCCACTGATCTGCTCTGTTGCTG                         GTGACTAGGAGCAGTAGCGAGAGGGATTCTGGATGGCCAAGTCGAAGAACC
genomic: AAACCCTAACACTCATCACGCCGCCACTGATCTGCTCTGTTGCTGgtactcctcg ... ggaaccgcagGTGACTAGGAGCAGTAGCGAGAGGGATTCTGGATGGCCAAGTCGAAGAACC
EST: gi|211084554|gb|FL151859.1|FL151859
EST:     CACTCATCACGCCGCCACTGATCTGCTCTGTTGCTG                         GTGACTAGGAGCAGTAGCGAGAGGGATTCTGGATGGCCAAGTCGAAGAACC
genomic: CACTCATCACGCCGCCACTGATCTGCTCTGTTGCTGgtactcctcg ... ggaaccgcagGTGACTAGGAGCAGTAGCGAGAGGGATTCTGGATGGCCAAGTCGAAGAACC
EST: gi|211199027|gb|FL151870.1|FL151870
EST:     AGAAACCCTAACACTCATCACGCCGCCACTGATCTGCTCTGTTGCTG                         GTGACTAGGAGCAGTAGCGAGAGGGATTCTGGATGGCCAAGTCGAAGAACC
genomic: AGAAACCCTAACACTCATCACGCCGCCACTGATCTGCTCTGTTGCTGgtactcctcg ... ggaaccgcagGTGACTAGGAGCAGTAGCGAGAGGGATTCTGGATGGCCAAGTCGAAGAACC
EST: gi|26557912|gb|CA830147.1|CA830147
EST:     CTGATCTGCTCTGTTGCTG                         G-GACTAGGAGCAGTAGCGAGAGGGATTCTGGATGGCCAAGTCGAAGAACC
genomic: CTGATCTGCTCTGTTGCTGgtactcctcg ... ggaaccgcagGTGACTAGGAGCAGTAGCGAGAGGGATTCTGGATGGCCAAGTCGAAGAACC
EST: gi|211081801|gb|FL151832.1|FL151832
EST:     ACCCTAACACTCATCACGCCGCCACTGATCTGCTCTGTTGCTG                         GTGACTAGGAGCAGTAGCGAGAGGGATTCTGGATGGCCAAGTCGAAGAACC
genomic: ACCCTAACACTCATCACGCCGCCACTGATCTGCTCTGTTGCTGgtactcctcg ... ggaaccgcagGTGACTAGGAGCAGTAGCGAGAGGGATTCTGGATGGCCAAGTCGAAGAACC
EST: gi|9732404|gb|BE511156.1|BE511156
EST:     CACTGATCTGCTCTGTTGCTG                         GTGACTAGGAGCAGTAGCGAGAGGGATTCTGGATGGCCAAGTCGAAGAACC
genomic: CACTGATCTGCTCTGTTGCTGgtactcctcg ... ggaaccgcagGTGACTAGGAGCAGTAGCGAGAGGGATTCTGGATGGCCAAGTCGAAGAACC
EST: gi|211199028|gb|FL151871.1|FL151871
EST:     CACTCATCACGCCGCCACTGATCCT-TTATGAGGCTG                         GTGACTAGGAGCAGTAGCGAGAGGGATTCTGGATGGCCAAGTCGAAGAACC
genomic: CACTCATCACGCCGCCACTGAT-CTGCTCTGTTGCTGgtactcctcg ... ggaaccgcagGTGACTAGGAGCAGTAGCGAGAGGGATTCTGGATGGCCAAGTCGAAGAACC
EST: gi|211223318|gb|FL027857.1|FL027857
EST:     AAACCCTAACACTCATCACGCCGCCACTGATCTGCTCTGTTGCTG                         GTGACTAGGAGCAGTAGCGAGAGGGATTCTGGATGGCSAAGTCGAAGAACC
genomic: AAACCCTAACACTCATCACGCCGCCACTGATCTGCTCTGTTGCTGgtactcctcg ... ggaaccgcagGTGACTAGGAGCAGTAGCGAGAGGGATTCTGGATGGCCAAGTCGAAGAACC
EST: gi|211081807|gb|FL151838.1|FL151838
EST:     TCTAGAAACCCTAACACTCATCACGCCGCCACTGATCTGCTCTGTTGCTG                         GTGACTAGGAGCAGTAGCGAGAGGGATTCTGGATGGCCAAGTCGAAGAACC
genomic: TCTAGAAACCCTAACACTCATCACGCCGCCACTGATCTGCTCTGTTGCTGgtactcctcg ... ggaaccgcagGTGACTAGGAGCAGTAGCGAGAGGGATTCTGGATGGCCAAGTCGAAGAACC
EST: gi|211081803|gb|FL151834.1|FL151834
EST:     AACACTCATCACGCCGCCACTGATCTGCTCTGTTGCTG                         GTGACTAGGAGCAGTAGCGANGAGGGATTCTGGATGGCCAAGTCGAAGAAC
genomic: AACACTCATCACGCCGCCACTGATCTGCTCTGTTGCTGgtactcctcg ... ggaaccgcagGTGACTAGGAGCAGTAGCGA-GAGGGATTCTGGATGGCCAAGTCGAAGAAC
EST: gi|211079080|gb|FL151830.1|FL151830
EST:     AAACCCTAACACTCATCACGCCGCCACTGATCTGCTCTGTTGCTG                         GTGACTAGGAGCAGTAGCGAGAGGGATTCTGGATGGCCAAGTCGAAGAACC
genomic: AAACCCTAACACTCATCACGCCGCCACTGATCTGCTCTGTTGCTGgtactcctcg ... ggaaccgcagGTGACTAGGAGCAGTAGCGAGAGGGATTCTGGATGGCCAAGTCGAAGAACC
EST: gi|211199022|gb|FL151865.1|FL151865
EST:     AACACTCATCACGCCGCCACTGATCTGCTCTGTTGCTG                         GTGACTAGGAGCAGTAGCGAGAGGGATTCTGGATGGCCAAGTCGAAGAACC
genomic: AACACTCATCACGCCGCCACTGATCTGCTCTGTTGCTGgtactcctcg ... ggaaccgcagGTGACTAGGAGCAGTAGCGAGAGGGATTCTGGATGGCCAAGTCGAAGAACC
EST: gi|83278566|gb|DV942574.1|DV942574
EST:     CACTGATCTGCTCTGTTGCTG                         GTGACTAGGAGCAGTAGCGAGAGGGATTCTGGATGGCCAAGTCGAAGAACC
genomic: CACTGATCTGCTCTGTTGCTGgtactcctcg ... ggaaccgcagGTGACTAGGAGCAGTAGCGAGAGGGATTCTGGATGGCCAAGTCGAAGAACC
EST: gi|211079075|gb|FL151825.1|FL151825
EST:     AACACTCATCACGCCGCCACTGATCTGCTCTGTTGCTG                         GTGACTAGGAGCAGTAGCGAGAGGGATTCTGGATGGCCAAGTCGAAGAACC
genomic: AACACTCATCACGCCGCCACTGATCTGCTCTGTTGCTGgtactcctcg ... ggaaccgcagGTGACTAGGAGCAGTAGCGAGAGGGATTCTGGATGGCCAAGTCGAAGAACC
EST: gi|4775901|gb|AI664904.1|AI664904
EST:     CTGCTCTGTTGCTG                         GTGACTAGGAGCAGTAGCGAGAGGGATTCTGGATGGCCAAGTCGAAGAACC
genomic: CTGCTCTGTTGCTGgtactcctcg ... ggaaccgcagGTGACTAGGAGCAGTAGCGAGAGGGATTCTGGATGGCCAAGTCGAAGAACC
EST: gi|211081812|gb|FL151843.1|FL151843
EST:     AAACCCTAACACTCATCACGCCGCCACTGATCTGCTCTGTTGCTG                         GTGACTAGGAGCAGTAGCRG-GAGGGATTCTGGATGGCCAAGTCGAAGAAC
genomic: AAACCCTAACACTCATCACGCCGCCACTGATCTGCTCTGTTGCTGgtactcctcg ... ggaaccgcagGTGACTAGGAGCAGTAGC-GAGAGGGATTCTGGATGGCCAAGTCGAAGAAC
EST: gi|211081810|gb|FL151841.1|FL151841
EST:     AGAAACCCTAACACTCATCACGCCGCCACTGATCTGCTCTGTTGCTG                         GTGACTAGGAGCAGTAGCGAGAGGGATTCTGGATGGCCAAGTCGAAGAACC
genomic: AGAAACCCTAACACTCATCACGCCGCCACTGATCTGCTCTGTTGCTGgtactcctcg ... ggaaccgcagGTGACTAGGAGCAGTAGCGAGAGGGATTCTGGATGGCCAAGTCGAAGAACC
EST: gi|211084542|gb|FL151847.1|FL151847
EST:     AACACTCATCACGCCGCCACTGATCTGCTCTGTTGCTG                         GTGACTAGGAGCAGTAGCGAGAGGGATTCTGGATGGCCAAGTCGAAGAACC
genomic: AACACTCATCACGCCGCCACTGATCTGCTCTGTTGCTGgtactcctcg ... ggaaccgcagGTGACTAGGAGCAGTAGCGAGAGGGATTCTGGATGGCCAAGTCGAAGAACC
EST: gi|211084544|gb|FL151849.1|FL151849
EST:     AGAAACCCTAACACTCATCACGCCGCCACTGATCTGCTCTGTTGCTG                         GTGACTAGGAGCAGTAGCGAGAGGGATTCTGGATGGCCAAGTCGAAGAACC
genomic: AGAAACCCTAACACTCATCACGCCGCCACTGATCTGCTCTGTTGCTGgtactcctcg ... ggaaccgcagGTGACTAGGAGCAGTAGCGAGAGGGATTCTGGATGGCCAAGTCGAAGAACC
EST: gi|211199024|gb|FL151867.1|FL151867
EST:     AACACTCATCACGCCGCCACTGATCTGCTCTGTTGCTG                         GTGACTAGGAGCAGTAGCGANGAGGGATTCTGGATGGCCAAGTCGAAGAAC
genomic: AACACTCATCACGCCGCCACTGATCTGCTCTGTTGCTGgtactcctcg ... ggaaccgcagGTGACTAGGAGCAGTAGCGA-GAGGGATTCTGGATGGCCAAGTCGAAGAAC
EST: gi|211199025|gb|FL151868.1|FL151868
EST:     AAACCCTAACACTCATCACGCCGCCACTGATCTGCTCTGTTGCTG                         GTGACTAGGAGCAGTAGCGANGAGGGATTCTGGATGGCCAAGTCGAAGAAC
genomic: AAACCCTAACACTCATCACGCCGCCACTGATCTGCTCTGTTGCTGgtactcctcg ... ggaaccgcagGTGACTAGGAGCAGTAGCGA-GAGGGATTCTGGATGGCCAAGTCGAAGAAC
EST: gi|31664546|gb|CD573479.1|CD573479
EST:     GCTCTGTTGCTG                         GTGACTAGGAGCAGTAGCGAGAGGGATTCTGGATGGCCAAGTCGAAGAACC
genomic: GCTCTGTTGCTGgtactcctcg ... ggaaccgcagGTGACTAGGAGCAGTAGCGAGAGGGATTCTGGATGGCCAAGTCGAAGAACC
EST: gi|211081814|gb|FL151845.1|FL151845
EST:     AGAAACCCTAACACTCATCACGCCGCCACTGATCTGCTCTGTTGCTG                         GTGACTAGGAGCAGTAGCGAGAGGGATTCTGGATGGCCAAGTCGAAGAACC
genomic: AGAAACCCTAACACTCATCACGCCGCCACTGATCTGCTCTGTTGCTGgtactcctcg ... ggaaccgcagGTGACTAGGAGCAGTAGCGAGAGGGATTCTGGATGGCCAAGTCGAAGAACC
EST: gi|211084555|gb|FL151860.1|FL151860
EST:     AGAAACCCTAACACTCATCACGCCGCCACTGATCTGCTCTGTTGCTG                         GTGACTAGGAGCAGTAGCGAGAGGGATTCTGGATGGCCAAGTCGAAGAACC
genomic: AGAAACCCTAACACTCATCACGCCGCCACTGATCTGCTCTGTTGCTGgtactcctcg ... ggaaccgcagGTGACTAGGAGCAGTAGCGAGAGGGATTCTGGATGGCCAAGTCGAAGAACC
EST: gi|211199019|gb|FL151862.1|FL151862
EST:     AAACCCTAACACTCATCACGCCGCCACTGATCTGCTCTGTTGCTG                         GTGACTAGGAGCAGTAGCGAGAGGGATTCTGGATGGCCAAGTCGAAGAACC
genomic: AAACCCTAACACTCATCACGCCGCCACTGATCTGCTCTGTTGCTGgtactcctcg ... ggaaccgcagGTGACTAGGAGCAGTAGCGAGAGGGATTCTGGATGGCCAAGTCGAAGAACC
EST: gi|9732403|gb|BE511155.1|BE511155
EST:     CACTGATCTGCTCTGTTGCTG                         GTGACTAGGACCAGTAGCGAGAGGGATTCTGGATGGCCAAGTCGAAGAACC
genomic: CACTGATCTGCTCTGTTGCTGgtactcctcg ... ggaaccgcagGTGACTAGGAGCAGTAGCGAGAGGGATTCTGGATGGCCAAGTCGAAGAACC
EST: gi|211081804|gb|FL151835.1|FL151835
EST:     AGAAACCCTAACACTCATCACGCCGCCACTNATCTGCTCTGTTGCTG                         GTGACTAGGAGYAGTAGCGRGAGGGATTCTGGATGGCCAAGTCGAAGAACC
genomic: AGAAACCCTAACACTCATCACGCCGCCACTGATCTGCTCTGTTGCTGgtactcctcg ... ggaaccgcagGTGACTAGGAGCAGTAGCGAGAGGGATTCTGGATGGCCAAGTCGAAGAACC
EST: gi|211076332|gb|FL151812.1|FL151812
EST:     AGAAACCCTAACACTCATCACGCCGCCACTGATCTGCTCTGTTGCTG                         GTGACTAGGAGCAGTAGCGAGAGGGATTCTGGATGGCCAAGTCGAAGAACC
genomic: AGAAACCCTAACACTCATCACGCCGCCACTGATCTGCTCTGTTGCTGgtactcctcg ... ggaaccgcagGTGACTAGGAGCAGTAGCGAGAGGGATTCTGGATGGCCAAGTCGAAGAACC
EST: gi|211199029|gb|FL151872.1|FL151872
EST:     CTAACACTCATCACGCCGCCACTGATCTGCTCTGTTGCTG                         GTGACTAGGAGCAGTAGCGAGAGGGATTCTGGATGGCCAAGTCGAAGAACC
genomic: CTAACACTCATCACGCCGCCACTGATCTGCTCTGTTGCTGgtactcctcg ... ggaaccgcagGTGACTAGGAGCAGTAGCGAGAGGGATTCTGGATGGCCAAGTCGAAGAACC
EST: gi|211084552|gb|FL151857.1|FL151857
EST:     AACACTCATCACGCCGCCACTGATCTGCTCTGTTGCTG                         GTGACTAGGAGCAGTAGCGAGAGGGATTCTGGATGGCCAAGTCGAAGAACC
genomic: AACACTCATCACGCCGCCACTGATCTGCTCTGTTGCTGgtactcctcg ... ggaaccgcagGTGACTAGGAGCAGTAGCGAGAGGGATTCTGGATGGCCAAGTCGAAGAACC
EST: gi|32933214|gb|CF038026.1|CF038026
EST:     AGAAACCCTAACACTCATCACGCCGCCACTGATCTGCTCTGTTGCTG                         GTGACTAGGAGCAGTAGCGAGAGGGATTCTGGATGGCCAAGTCGAAGAACC
genomic: AGAAACCCTAACACTCATCACGCCGCCACTGATCTGCTCTGTTGCTGgtactcctcg ... ggaaccgcagGTGACTAGGAGCAGTAGCGAGAGGGATTCTGGATGGCCAAGTCGAAGAACC
EST: gi|211081813|gb|FL151844.1|FL151844
EST:     AGAAACCCTAACACTCATCACGCCGCCACTGATCTGCTCTGTTGCTG                         GTGACTAGGAGCAGTAGCGAGAGGGATTCTGGATGGCCAAGTCGAAGAACC
genomic: AGAAACCCTAACACTCATCACGCCGCCACTGATCTGCTCTGTTGCTGgtactcctcg ... ggaaccgcagGTGACTAGGAGCAGTAGCGAGAGGGATTCTGGATGGCCAAGTCGAAGAACC
EST: gi|211084549|gb|FL151854.1|FL151854
EST:     AACACTCATCACGCCGCCACTGATCTGCTCTGTTGCTG                         GTGACTAGGAGCAGTAGCGAGAGGGATTCTGGATGGCCAAGTCGAAGAACC
genomic: AACACTCATCACGCCGCCACTGATCTGCTCTGTTGCTGgtactcctcg ... ggaaccgcagGTGACTAGGAGCAGTAGCGAGAGGGATTCTGGATGGCCAAGTCGAAGAACC
EST: gi|211199020|gb|FL151863.1|FL151863
EST:     AGAAACCCTAACACTCATCACGCCGCCACTGATCTGCTCTGTTGCTG                         GTGACTAGGAGCAGTAGCGAGAGGGATTCTGGATGGCCAAGTCGAAGAACC
genomic: AGAAACCCTAACACTCATCACGCCGCCACTGATCTGCTCTGTTGCTGgtactcctcg ... ggaaccgcagGTGACTAGGAGCAGTAGCGAGAGGGATTCTGGATGGCCAAGTCGAAGAACC
EST: gi|211076328|gb|FL151808.1|FL151808
EST:     TAGAAACCCTAACACTCATCACGCCGCCACTGATCTGCTCTGTTGCTG                         GTGACTAGGAGCAGTAGCGAGAGGGATTCTGGATGGCCAAGTCGAAGAACC
genomic: TAGAAACCCTAACACTCATCACGCCGCCACTGATCTGCTCTGTTGCTGgtactcctcg ... ggaaccgcagGTGACTAGGAGCAGTAGCGAGAGGGATTCTGGATGGCCAAGTCGAAGAACC
EST: gi|211079074|gb|FL151824.1|FL151824
EST:     AACACTCATCACGCCGCCACTGATCTGCTCTGTTGCTG                         GTGACTAGGAGCAGTAGCGAGAGGGATTCTGGATGGCCAAGTCGAAGAACC
genomic: AACACTCATCACGCCGCCACTGATCTGCTCTGTTGCTGgtactcctcg ... ggaaccgcagGTGACTAGGAGCAGTAGCGAGAGGGATTCTGGATGGCCAAGTCGAAGAACC
EST: gi|211084551|gb|FL151856.1|FL151856
EST:     AGAAACCCTAACACTCATCACGCCGCCACTGATCTGCTCTGTTGCTG                         GTGACTAGGAGCAGTAGCGAGAGGGATTCTGGATGGCCAAGTCGAAGAACC
genomic: AGAAACCCTAACACTCATCACGCCGCCACTGATCTGCTCTGTTGCTGgtactcctcg ... ggaaccgcagGTGACTAGGAGCAGTAGCGAGAGGGATTCTGGATGGCCAAGTCGAAGAACC
EST: gi|211081805|gb|FL151836.1|FL151836
EST:     AGAAACCCTAACACTCATCACGCCGCCACTGATCTGCTCTGTTGCTG                         GTGACTAGGAGCAGTAGCGAGAGGGATTCTGGATGGCCAAGTCGAAGAACC
genomic: AGAAACCCTAACACTCATCACGCCGCCACTGATCTGCTCTGTTGCTGgtactcctcg ... ggaaccgcagGTGACTAGGAGCAGTAGCGAGAGGGATTCTGGATGGCCAAGTCGAAGAACC
EST: gi|211076326|gb|FL151806.1|FL151806
EST:     AGAAACCCTAACACTCATCACGCCGCCACTGATCTGCTCTGTTGCTG                         GTGACTAGGAGCAGTAGCGAGAGGGATTCTGGATGGCCAAGTCGAAGAACC
genomic: AGAAACCCTAACACTCATCACGCCGCCACTGATCTGCTCTGTTGCTGgtactcctcg ... ggaaccgcagGTGACTAGGAGCAGTAGCGAGAGGGATTCTGGATGGCCAAGTCGAAGAACC
EST: gi|211081800|gb|FL151831.1|FL151831
EST:     TCTAGAAACCCTAACACTCATCACGCCGCCNCTGATCTGCTCTGTTGCTG                         GTGACTAGGAGCAGTAGCGAGAGGGATTCTGGATGGCCAAGTCGAAGAACC
genomic: TCTAGAAACCCTAACACTCATCACGCCGCCACTGATCTGCTCTGTTGCTGgtactcctcg ... ggaaccgcagGTGACTAGGAGCAGTAGCGAGAGGGATTCTGGATGGCCAAGTCGAAGAACC
EST: gi|211079069|gb|FL151819.1|FL151819
EST:     AGAAACCCTAACACTCATCACGCCGCCACTGATCTGCTCTGTTGCTG                         GTGACTAGGAGCAGTAGCGAGAGGGATTCTGGATGGCCAAGTCGAAGAACC
genomic: AGAAACCCTAACACTCATCACGCCGCCACTGATCTGCTCTGTTGCTGgtactcctcg ... ggaaccgcagGTGACTAGGAGCAGTAGCGAGAGGGATTCTGGATGGCCAAGTCGAAGAACC
EST: gi|211079073|gb|FL151823.1|FL151823
EST:     AACACTCATCACGCCGCCACTGATCTGCTCTGTTGCTG                         GTGACTAGGAGCAGTAGCGAGAGGGATTCTGGATGGCCAAGTCGAAGAACC
genomic: AACACTCATCACGCCGCCACTGATCTGCTCTGTTGCTGgtactcctcg ... ggaaccgcagGTGACTAGGAGCAGTAGCGAGAGGGATTCTGGATGGCCAAGTCGAAGAACC
EST: gi|211084543|gb|FL151848.1|FL151848
EST:     AGAAACCCTAACACTCATCACGCCGCCACTGATCTGCTCTGTTGCTG                         GTGACTAGGAGCAGTAGCRAGAGGGATTCTGGATGGCCAAGTCGAAGAACC
genomic: AGAAACCCTAACACTCATCACGCCGCCACTGATCTGCTCTGTTGCTGgtactcctcg ... ggaaccgcagGTGACTAGGAGCAGTAGCGAGAGGGATTCTGGATGGCCAAGTCGAAGAACC
EST: gi|211084541|gb|FL151846.1|FL151846
EST:     ATCACGCCGCCACTGATCTGCTCTGTTGCTG                         GTGACTAGGAGCAGTAGCGAGAGGGATTCTGGATGGCCAAGTCGAAGAACC
genomic: ATCACGCCGCCACTGATCTGCTCTGTTGCTGgtactcctcg ... ggaaccgcagGTGACTAGGAGCAGTAGCGAGAGGGATTCTGGATGGCCAAGTCGAAGAACC
EST: gi|211081802|gb|FL151833.1|FL151833
EST:     AACACTCATCACGCCGCCACTGATCTGCTCTGTTGCTG                         GTGACTAGGAGCAGTAGCGAGAGGGATTCTGGATGGCCAAGTCGAAGAACC
genomic: AACACTCATCACGCCGCCACTGATCTGCTCTGTTGCTGgtactcctcg ... ggaaccgcagGTGACTAGGAGCAGTAGCGAGAGGGATTCTGGATGGCCAAGTCGAAGAACC
EST: gi|211079068|gb|FL151818.1|FL151818
EST:     AGAAACCCTAACACTCATCACGCCGCCACTGATCTGCTCTGTTGCTG                         GTGACTAGGAGCAGTAGCGRNGAGGGATTCTGGATGGCCAAGTCGAAGAAC
genomic: AGAAACCCTAACACTCATCACGCCGCCACTGATCTGCTCTGTTGCTGgtactcctcg ... ggaaccgcagGTGACTAGGAGCAGTAGCG-AGAGGGATTCTGGATGGCCAAGTCGAAGAAC
EST: gi|211081809|gb|FL151840.1|FL151840
EST:     AGAAACCCTAACACTCATCACGCCGCCACTGATCTGCTCTGTTGCTG                         GTGACTAGGAGCAGTAGCGAGAGGGATTCTGGATGGCCAAGTCGAAGAACC
genomic: AGAAACCCTAACACTCATCACGCCGCCACTGATCTGCTCTGTTGCTGgtactcctcg ... ggaaccgcagGTGACTAGGAGCAGTAGCGAGAGGGATTCTGGATGGCCAAGTCGAAGAACC
EST: gi|211084548|gb|FL151853.1|FL151853
EST:     AACACTCATCACGCCGCCACTGATCTGCTCTGTTGCTG                         GTGACTAGGAGCAGTAGCGAGAGGGATTCTGGATGGCCAAGTCGAAGAACC
genomic: AACACTCATCACGCCGCCACTGATCTGCTCTGTTGCTGgtactcctcg ... ggaaccgcagGTGACTAGGAGCAGTAGCGAGAGGGATTCTGGATGGCCAAGTCGAAGAACC
EST: gi|211076329|gb|FL151809.1|FL151809
EST:     AAACCCTAACACTCATCACGCCGCCACTGATCTGCTCTGTTGCTG                         GTGACTAGGAGCAGTAGCGAGAGGGATTCTGGATGGCCAAGTCGAAGAACC
genomic: AAACCCTAACACTCATCACGCCGCCACTGATCTGCTCTGTTGCTGgtactcctcg ... ggaaccgcagGTGACTAGGAGCAGTAGCGAGAGGGATTCTGGATGGCCAAGTCGAAGAACC
EST: gi|211221247|gb|FL027835.1|FL027835
EST:     AACACTCATCACGCCGCCACTGATCTGCTCTGTTGCTG                         GTGACTAGGAGCAGTAGCGAGAGGGATTCTGGATGGCCAAGTCGAAGAACC
genomic: AACACTCATCACGCCGCCACTGATCTGCTCTGTTGCTGgtactcctcg ... ggaaccgcagGTGACTAGGAGCAGTAGCGAGAGGGATTCTGGATGGCCAAGTCGAAGAACC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccgagtcctcctccggattcgatgttcgtctcctgatttattggtggaaccgcagGTGACTAGGAGCAGTAGCGAGAGGGATTCTGGATGGCCAAGTCGAAGAACCACACGGCGCATAACCAGTCGTTCAAGGCGCACAAGAACGGCATCAAGAA
                              tcctgat  putative branch site (score: 3)
                                 tgatttatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtactcctcgtcttcctcccgagtcctcctccggattcgatgttcgtctcctgatttattggtggaaccgcagGTGACTAGGAGCAGTAGCGAGAGGGATTCTGGATGGCCAAGTCGAAGAACCACACGGCGCATAACCAGTCGTTCAAGGCGCACAAGAACGGCATCAAGAA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC