Skip to another splice site:
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cacatgctaaatttgtgcgtgcggtcattgagactgactatctgacatatattttgtgttaaacatttttcactaaatctctgcatcgatcgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTGGACGTGGACATCCTGGTGACCGGGCACACGCACCAGTTCAAGGCATATA

Basic information

species Zea mays
transcript GRMZM2G068489_T02
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G068489_T02 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os02g16550.1 (Oryza sativa), 3'ss of exon 2
cacatgctaaatttgtgcgtgcggtcattgagactgactatctgacatatattttgtgttaaacatttttcactaaatctctgcatcgatcgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTGGACGTGGACATCCTGGTGACCGGGCACACGCACCAGTTCAAGGCATATA
|   |  | | |   |||    |    |    | | | | ||  || |    ||  | |  |   | |   | |   |      | |   | | || ||||||||||||||||||||  |||||||||||||||||||||| ||||||||||||||||||||||| || || |||||||| |||||||||||||| || |
ctttttgttagtacatgccaaagagtctgatcagtcagtgtcaaacttgagattgttttgcagtgtatcctaatcttttctctgaccatgcaatcatcagGTTGTTCCATGGGGCGATTTGGACTCCCTGGCGATGCTCCAACGGCAGCTGGACGTGGACATCCTCGTCACAGGGCACACCCACCAGTTCAAGGCGTACA

upper sequence: GRMZM2G068489_T02 (Zea mays), 3'ss of exon 1
lower sequence: Vv01s0026g01860.t01 (Vitis vinifera), 3'ss of exon 3
cacatgctaaatttgtgcgtgc--ggtcattgagactgactatctgacatatattttgtgttaaacatttttcactaaatctctgcatc-gatcgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTGGACGTGGACATCCTGGTGACCGGGCACACGCACCAGTTCAAGGCATATA
    || | | | ||   ||    | || ||    ||     ||     |      | | |    ||||   || ||| | | |   |   | | | |   ||||| |||||||||| ||| |||| || ||||| ||||| ||  ||||| |||| ||||||||||| ||||| || ||||| || ||||||||||| || |
---gtgatgattgtgatagtaaaagatccttagttctcttcttcaattttgatacatttatctggcattagacattaattttttctttttaaacaatctgaagGTTATTCCATGGGGAGACTTGGATTCGCTGGCAATGCTACAAAGGCAGTTGGATGTGGACATCCTAGTGACTGGACACACCCATCAGTTCAAGGCCTACA

upper sequence: GRMZM2G068489_T02 (Zea mays), 3'ss of exon 1
lower sequence: PP1S75_108V6.1 (Physcomitrella patens), 3'ss of exon 2
cacatgctaaatttgtgcgtgcggtcattgag-actgactatctgacatatattttgtgttaaacatttttcactaaatctctgcatcgatcgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTGGACGTGGACATCCTGGTGACCGGGCACACGCACCAGTTCAAGGCATATA
||  |  | | ||| |   |     | |  |  | |   |||   |  |   |||  | ||      ||||  ||       |   || || || |  |||||||| |||||||| ||  |||| ||  |||||||||| || |||||||| ||||| || || ||| | || || ||||| ||||||||||| ||||| |
catgtttttagtttatttatttaaacgtaaattaatatttatactagcttcctttccttttcttttcttttatcttcggtgttttttctat-gatctgcagGTTGTGCCATGGGGAGATTTGGATTCATTGGCGATGCTTCAACGGCAGCTAGACGTTGATATTCTGATCACTGGTCACACTCACCAGTTCAAAGCATACA

upper sequence: GRMZM2G068489_T02 (Zea mays), 3'ss of exon 1
lower sequence: EFJ29006 (Selaginella moellendorffii), 3'ss of exon 2
cacatgctaaatttgtgcgtgcggtcattgagactgactatctgacatatattttgtgttaaacatttttcactaaatctctgcatcgat-cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTGGACGTGGACATCCTGGTGACCGGGCACACGCACCAGTTCAAGGCATATA
                                        | | |   ||   | |      |   | | ||   |    |||      |  |  |  |||||  | || ||||||||| |||| |||||||| ||||||||| ||||||| ||||| ||||||||  | |||||||||||||||||||||||||| || |
---------------------------------------gtataattcattcatcgcccctga---tctccatccatctcctgtgctcttgtgctcttcagGTGATCCCCTGGGGCGACTTGGATTCCCTGGCAATGCTCCAGAGGCAGCTCGACGTTGACATCCTCATCACCGGGCACACGCACCAGTTCAAGGCGTACA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18164354|gb|BM334193.1|BM334193
EST:     TTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: TTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|9254692|gb|BE345160.1|BE345160
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|18171590|gb|BM341430.1|BM341430
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCTATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|18176390|gb|BM351361.1|BM351361
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|17929877|gb|BM266837.1|BM266837
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|18172308|gb|BM347696.1|BM347696
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|28986711|gb|CB351272.1|CB351272
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|18166494|gb|BM336333.1|BM336333
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGACTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|89758464|gb|DY687636.1|DY687636
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|18168831|gb|BM338671.1|BM338671
EST:     GTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCT-GCAGATGCTCCAACGGCAGCT
genomic: GTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGC-GATGCTCCAGCGGCAGCT
EST: gi|18164204|gb|BM334043.1|BM334043
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|18167618|gb|BM337458.1|BM337458
EST:     GGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGACGATGCTCCAGCGGCAGCTG
genomic: GGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|16922447|gb|BM075582.1|BM075582
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|18166018|gb|BM335857.1|BM335857
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|17929975|gb|BM266935.1|BM266935
EST:     AGACACTTGCAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|17931451|gb|BM268411.1|BM268411
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|18176758|gb|BM351691.1|BM351691
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|37374227|gb|CF623458.1|CF623458
EST:     GGGCTGTAGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: GGGCTGT-GCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|16922766|gb|BM075758.1|BM075758
EST:     CTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: CTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|18166233|gb|BM336072.1|BM336072
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCAG-CCTGGACTCCCTGGCGATGCTCCAGCGGCAGCT
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGC-GACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCT
EST: gi|18172919|gb|BM348307.1|BM348307
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|17929736|gb|BM266648.1|BM266648
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|18166858|gb|BM336697.1|BM336697
EST:     AGGCACTTACGATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|71770168|gb|DR968105.1|DR968105
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|16379711|gb|BI993107.1|BI993107
EST:     GCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: GCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|18166181|gb|BM336020.1|BM336020
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|28986213|gb|CB351025.1|CB351025
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|91874254|gb|EB404211.1|EB404211
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|9731462|gb|BE510214.1|BE510214
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|17929554|gb|BM266514.1|BM266514
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|5649996|gb|AI920356.1|AI920356
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|16920491|gb|BM074682.1|BM074682
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|5608043|gb|AI901710.1|AI901710
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|60352727|gb|DN219700.1|DN219700
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|17929791|gb|BM266751.1|BM266751
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|18168071|gb|BM337911.1|BM337911
EST:     TTTAAGCTTGGGCTGTCCCATGACCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: TTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|4646771|gb|AI621846.1|AI621846
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|60400169|gb|DN232976.1|DN232976
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|37381752|gb|CF627773.1|CF627773
EST:     AGACACTTACAATTGGTCACTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|5686762|gb|AI939855.1|AI939855
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|18165026|gb|BM334871.1|BM334871
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|18170906|gb|BM340746.1|BM340746
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|6653791|gb|AW267196.1|AW267196
EST:     AGNCNCTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCAATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|18168243|gb|BM338089.1|BM338089
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|18170733|gb|BM340573.1|BM340573
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|18175265|gb|BM350641.1|BM350641
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|18174724|gb|BM350112.1|BM350112
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|18172404|gb|BM347792.1|BM347792
EST:     AGACACTGACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|18173147|gb|BM348535.1|BM348535
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|18170505|gb|BM340345.1|BM340345
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|60346136|gb|DN213109.1|DN213109
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|18162562|gb|BM332401.1|BM332401
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|28986457|gb|CB351147.1|CB351147
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|67014558|gb|CO443307.1|CO443307
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|18174844|gb|BM350232.1|BM350232
EST:     GCCATGGCCATCAG                         GTTGTTCCATGGGACGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: GCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|17931857|gb|BM268817.1|BM268817
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|18165762|gb|BM335601.1|BM335601
EST:     GGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGAACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: GGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|17929714|gb|BM266680.1|BM266680
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|18165393|gb|BM335232.1|BM335232
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|18162168|gb|BM332007.1|BM332007
EST:     AGACACTTACAATTGGTCAGTTTAGGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|18162241|gb|BM332080.1|BM332080
EST:     CAATTGGTCAGTTTAAGCTTGGACTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: CAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|18168576|gb|BM338416.1|BM338416
EST:     AGACACTTGCAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGGCCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|18162464|gb|BM332303.1|BM332303
EST:     GTCAGTTT-AGCTTGGGGCTGTGCCAAGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: GTCAGTTTAAGCTT-GGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|211405213|gb|FL477459.1|FL477459
EST:     ACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTCCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: ACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|18174061|gb|BM349449.1|BM349449
EST:     GTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: GTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|33942589|gb|CF349189.1|CF349189
EST:     ACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: ACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|13490697|gb|BG517461.1|BG517461
EST:     GACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGTTTCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCT
genomic: GACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATG-GCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCT
EST: gi|16921680|gb|BM075252.1|BM075252
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|9461399|gb|BE453713.1|BE453713
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|18164498|gb|BM334337.1|BM334337
EST:     GACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAACGGCAGCTG
genomic: GACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTG-CCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|18176377|gb|BM351352.1|BM351352
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
EST: gi|18172810|gb|BM348198.1|BM348198
EST:     AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAG                         GTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG
genomic: AGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 134

CCATATTACCAGAGGTGAACATGATGAGGATGCTCGATACCCAGAGACTAAGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTGGACGTGGACATCCTGGTGACCGGGCACACGCACCAGTTCAAGGCATATA


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 165

CCATATTACCAGAGGTGAACATGATGAGGATGCTCGATACCCAGAGACTAAGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTGGACGTGGACATCCTGGTGACCGGGCACACGCACCAGTTCAAGGCATATA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 210

CCATATTACCAGAGGTGAACATGATGAGGATGCTCGATACCCAGAGACTAAGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTGGACGTGGACATCCTGGTGACCGGGCACACGCACCAGTTCAAGGCATATA


Block sizes: 49 (upstream exon), 47 (downstream exon)
Score: 151

CCATATTACCAGAGGTGAACATGATGAGGATGCTCGATACCCAGAGACTAAGACACTTACAATTGGTCAGTTTAAGCTTGGGCTGTGCCATGGCCATCAGgtttgttttt ... cgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTGGACGTGGACATCCTGGTGACCGGGCACACGCACCAGTTCAAGGCATATA




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catatattttgtgttaaacatttttcactaaatctctgcatcgatcgaacaccagGTTGTTCCATGGGGCGACCTGGACTCCCTGGCGATGCTCCAGCGGCAGCTGGACGTGGACATCCTGGTGACCGGGCACACGCACCAGTTCAAGGCATATA
                         cactaaa  putative branch site (score: 151)
           tgttaaacattttt  TA-rich tract