Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atggtatcccatttttctattgcagattgatggtttgtatgaactgagtgtttttgttctgatgaaatagagagtaataattctcataatttcaatgtagGAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGAGGTGAACATGATGAGGATGCTCGATACCCAGAGACTAAGACACTTACAA

Basic information

species Zea mays
transcript GRMZM2G068489_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G068489_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os02g16550.1 (Oryza sativa), 3'ss of exon 1
atggtatcccatttttctattgcagattgatggtttgtatgaactgagtgt-ttttgttctgatgaaatagagagtaataatt-----------ctcataatttcaatgtagGAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGAGGTGAACATGATGAGGATGCTCGATACCCAGAGACTAAGACACTTACAA
            |||  |    |||| | |  || ||   ||||||  | | ||||| |||||||||||   || | ||  ||            |  ||||||   | |||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||||| |
---------tgatttgttgacacagacttactgtatg---gaactgtttatcttttggtctgatgaaatgcggactgatttttatttttatttttttgtaatttttctatagGAAGTTCATGACTACCTGAAAAGCCTTTGTCCTGATCTCCATATAACCAGAGGTGAATATGATGAGGATGCTCGTTACCCAGAGACTAAGACACTTACTA

upper sequence: GRMZM2G068489_T01 (Zea mays), 3'ss of exon 1
lower sequence: Vv17s0000g05880.t01 (Vitis vinifera), 3'ss of exon 1
----atggtatcccatttttctattgcag-attgatggtttgtatgaactgagtgtttttgttctgatgaaatagagagtaata-attctcataatttcaatgtagGAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGAGGTGAACATGATGAGGATGCTCGATACCCAGAGACTAAGACACTTACAA
    |||  |     ||||   |||||   ||  ||| |||||        ||| |  ||| | |    |||  ||    | || ||||| || ||     || |||| || ||||| ||| |||||| |||||| |||||  | ||||||||| |||||||| ||||||||||  | || ||||||||||| || |||||||| |
gtgtatgtaaattggttttgggattgctctatccatgttttgt-----tgtagtttacttgatgtagaaaaagtgacttcattacattctaatgatggtt-tgcagGAGGTTCATGATTACTTGAAAACCCTTTGTCCTGACATGCATATTACCCGAGGTGAATATGATGAGGAGACACGTTACCCAGAGACCAAAACACTTACCA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18173411|gb|BM348799.1|BM348799
EST:     TGCCAGGCAAGATCCAACACATCATCTGCACTGGCAATCTGTGCATCAAG                         GAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGA
genomic: TGCCCGGCAAGATCCAACACATCATCTGCACTGGCAATCTCTGCATCAAGgtaaccttac ... ttcaatgtagGAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGA
EST: gi|211095631|gb|FL309358.1|FL309358
EST:     TGCCCGGCAAGATCCAACACATCATCTGCACTGGCAATCTCTGCATCAAG                         GAAGTCCATTNACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAG
genomic: TGCCCGGCAAGATCCAACACATCATCTGCACTGGCAATCTCTGCATCAAGgtaaccttac ... ttcaatgtagGAAGTCCATG-ACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAG
EST: gi|18171994|gb|BM347382.1|BM347382
EST:     TGCCCGGCAAGATCCAACACATCATCTGCACTGGCAATCTCTGCATCAAG                         GAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGA
genomic: TGCCCGGCAAGATCCAACACATCATCTGCACTGGCAATCTCTGCATCAAGgtaaccttac ... ttcaatgtagGAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGA
EST: gi|211089235|gb|FL353068.1|FL353068
EST:     TGCCCGGCAAGATCCAACACATCATCTGCACTGGCAATCTCTGCATCAAG                         GAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGA
genomic: TGCCCGGCAAGATCCAACACATCATCTGCACTGGCAATCTCTGCATCAAGgtaaccttac ... ttcaatgtagGAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGA
EST: gi|17930508|gb|BM267468.1|BM267468
EST:     TGCCCGGCAAGATCCAACACATCATCTGCACTGGCAATCTCTGCATCAAG                         GAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGA
genomic: TGCCCGGCAAGATCCAACACATCATCTGCACTGGCAATCTCTGCATCAAGgtaaccttac ... ttcaatgtagGAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGA
EST: gi|71770169|gb|DR968106.1|DR968106
EST:     TGCCCGGCAAGATCCAACACATCATCTGCACTGGCAATCTCTGCATCAAG                         GAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGA
genomic: TGCCCGGCAAGATCCAACACATCATCTGCACTGGCAATCTCTGCATCAAGgtaaccttac ... ttcaatgtagGAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGA
EST: gi|18172679|gb|BM348067.1|BM348067
EST:     TGCCCGGCAAGATCCAACACATCATCTGCACTGGCAATCTCTGCATCAAG                         GAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGA
genomic: TGCCCGGCAAGATCCAACACATCATCTGCACTGGCAATCTCTGCATCAAGgtaaccttac ... ttcaatgtagGAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGA
EST: gi|18162565|gb|BM332404.1|BM332404
EST:     TGCCCGGCAAGATCCAACACATCATCTGCACTGGCAATCTCTGCATCAAG                         GAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGA
genomic: TGCCCGGCAAGATCCAACACATCATCTGCACTGGCAATCTCTGCATCAAGgtaaccttac ... ttcaatgtagGAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGA
EST: gi|18170906|gb|BM340746.1|BM340746
EST:     TGCCCGGCAAGATCCAACACATCATCTGCACTGGCAATCTTTGCATCAAG                         GAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGA
genomic: TGCCCGGCAAGATCCAACACATCATCTGCACTGGCAATCTCTGCATCAAGgtaaccttac ... ttcaatgtagGAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGA
EST: gi|17929470|gb|BM266430.1|BM266430
EST:     GCACTGGCAATCTATGCATCAAG                         GAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGA
genomic: GCACTGGCAATCTCTGCATCAAGgtaaccttac ... ttcaatgtagGAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGA
EST: gi|211108545|gb|FL307928.1|FL307928
EST:     TGCCCGGCAAGATCCAACACATCATCTGCACTGGCAATCTCTGCATCAAG                         GAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGA
genomic: TGCCCGGCAAGATCCAACACATCATCTGCACTGGCAATCTCTGCATCAAGgtaaccttac ... ttcaatgtagGAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGA
EST: gi|18170147|gb|BM339987.1|BM339987
EST:     TGCCCGGCAAGATCCAACACATCATCTGCACTGGCAATCTCTGCATCAAG                         GAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGA
genomic: TGCCCGGCAAGATCCAACACATCATCTGCACTGGCAATCTCTGCATCAAGgtaaccttac ... ttcaatgtagGAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGA
EST: gi|18171992|gb|BM347380.1|BM347380
EST:     TGCCCGGCAAGATCCAACACATCATCTGCACTGGCAATCTCTGCATCAAG                         GAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGA
genomic: TGCCCGGCAAGATCCAACACATCATCTGCACTGGCAATCTCTGCATCAAGgtaaccttac ... ttcaatgtagGAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGA
EST: gi|101391954|gb|EB817907.1|EB817907
EST:     TGCCCGGCAAGATCCAACACATCATCTGCACTGGCAATCTCTGCATCAAG                         GAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGA
genomic: TGCCCGGCAAGATCCAACACATCATCTGCACTGGCAATCTCTGCATCAAGgtaaccttac ... ttcaatgtagGAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGA
EST: gi|32797452|gb|CD949688.1|CD949688
EST:     GATCCAACACATCATCTGCACTGGCAATCTCTGCATCAAG                         GAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGA
genomic: GATCCAACACATCATCTGCACTGGCAATCTCTGCATCAAGgtaaccttac ... ttcaatgtagGAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGA
EST: gi|211160929|gb|FL360844.1|FL360844
EST:     TGCCCGGCAAGATCCAACACATCATCTGCACTGGCAATCTCTGCATCAAG                         GAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGA
genomic: TGCCCGGCAAGATCCAACACATCATCTGCACTGGCAATCTCTGCATCAAGgtaaccttac ... ttcaatgtagGAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGA
EST: gi|32796841|gb|CD949077.1|CD949077
EST:     GATCCCACACATCATCTGCACTGGCAATCTCTGCATCAAG                         GAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGA
genomic: GATCCAACACATCATCTGCACTGGCAATCTCTGCATCAAGgtaaccttac ... ttcaatgtagGAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGA
EST: gi|18175175|gb|BM350563.1|BM350563
EST:     TGCCCGGCAAGATCCAACACATCATCTGCACTGGCAATCTCTGCATCAAG                         GAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGA
genomic: TGCCCGGCAAGATCCAACACATCATCTGCACTGGCAATCTCTGCATCAAGgtaaccttac ... ttcaatgtagGAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGA
EST: gi|18165883|gb|BM335722.1|BM335722
EST:     TGCCCGGCAAGATCCAACACATCATCTGCACTGGCAATCTCTGCATCAAG                         GAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGA
genomic: TGCCCGGCAAGATCCAACACATCATCTGCACTGGCAATCTCTGCATCAAGgtaaccttac ... ttcaatgtagGAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGA
EST: gi|18162668|gb|BM332507.1|BM332507
EST:     TGCCCGGCAAGATCCAACACATCATCTGCACTGGCAATCTCTGCATCAAG                         GAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGA
genomic: TGCCCGGCAAGATCCAACACATCATCTGCACTGGCAATCTCTGCATCAAGgtaaccttac ... ttcaatgtagGAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGA
EST: gi|18176758|gb|BM351691.1|BM351691
EST:     AAGATCCAAACACATCATCTGCACTGGCAATCTCTGCATCAAG                         GAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGA
genomic: AAGATCC-AACACATCATCTGCACTGGCAATCTCTGCATCAAGgtaaccttac ... ttcaatgtagGAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGA
EST: gi|18175924|gb|BM351064.1|BM351064
EST:     TGCCCGGCAAGATCCAACACATCATCTGCACTGGCAATCTCTGCATCAAG                         GAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGA
genomic: TGCCCGGCAAGATCCAACACATCATCTGCACTGGCAATCTCTGCATCAAGgtaaccttac ... ttcaatgtagGAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGA
EST: gi|13490697|gb|BG517461.1|BG517461
EST:     GGCAAGATCCAACACATCATCTGCACTGGCAATCTCTGCATCAAG                         GAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGA
genomic: GGCAAGATCCAACACATCATCTGCACTGGCAATCTCTGCATCAAGgtaaccttac ... ttcaatgtagGAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGA
EST: gi|60395430|gb|DN228300.1|DN228300
EST:     TGCCCGGCAAGATCCAACACATCATCTGCACTGGCAATCTCTGCATCAAG                         GAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGA
genomic: TGCCCGGCAAGATCCAACACATCATCTGCACTGGCAATCTCTGCATCAAGgtaaccttac ... ttcaatgtagGAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGA
EST: gi|67021172|gb|CO449921.1|CO449921
EST:     TGCCCGGCAAGATCCAACACATCATCTGCACTGGCAATCTCTGCATCAAG                         GAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGA
genomic: TGCCCGGCAAGATCCAACACATCATCTGCACTGGCAATCTCTGCATCAAGgtaaccttac ... ttcaatgtagGAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGA
EST: gi|211152981|gb|FL362973.1|FL362973
EST:     TGCCCGGCAAGATCCAACACATCATCTGCACTGGCAATCTCTGCATCAAG                         GAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGA
genomic: TGCCCGGCAAGATCCAACACATCATCTGCACTGGCAATCTCTGCATCAAGgtaaccttac ... ttcaatgtagGAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGA
EST: gi|18169374|gb|BM339214.1|BM339214
EST:     TGCCCGGCAAGATCCAACACATCATCTGCACTGGCAATCTCTGCATCAAG                         GAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGA
genomic: TGCCCGGCAAGATCCAACACATCATCTGCACTGGCAATCTCTGCATCAAGgtaaccttac ... ttcaatgtagGAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGA
EST: gi|60340695|gb|DN207668.1|DN207668
EST:     TGCCCGGCAAGATCCAACACATCATCTGCACTGGCAATCTCTGCATCAAG                         GAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGA
genomic: TGCCCGGCAAGATCCAACACATCATCTGCACTGGCAATCTCTGCATCAAGgtaaccttac ... ttcaatgtagGAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGA
EST: gi|211370861|gb|FL366763.1|FL366763
EST:     TGCCCGGCAAGATCCAACACATCATCTGCACTGGCAATCTCTGCATCAAG                         GAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGA
genomic: TGCCCGGCAAGATCCAACACATCATCTGCACTGGCAATCTCTGCATCAAGgtaaccttac ... ttcaatgtagGAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGA
EST: gi|71775398|gb|DR973276.1|DR973276
EST:     TGCCCGGCAAGATCCAACACATCATCTGCACTGGCAATCTCTGCATCAAG                         GAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGA
genomic: TGCCCGGCAAGATCCAACACATCATCTGCACTGGCAATCTCTGCATCAAGgtaaccttac ... ttcaatgtagGAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGA
EST: gi|18168678|gb|BM338518.1|BM338518
EST:     TGCCCGGCAAGATCCAACACATCATCTGCACTGGCAATCTCTTCATCAAG                         GAAGTCCATGACTACCTGAAGAGCCTTTGCCCTGATCTCCATATTACCAGA
genomic: TGCCCGGCAAGATCCAACACATCATCTGCACTGGCAATCTCTGCATCAAGgtaaccttac ... ttcaatgtagGAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGA
EST: gi|18175731|gb|BM350939.1|BM350939
EST:     TGCCCGGCAAGATCCAACACATCATCTGCACTGGCAATCTCTGCATCAAG                         GAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGA
genomic: TGCCCGGCAAGATCCAACACATCATCTGCACTGGCAATCTCTGCATCAAGgtaaccttac ... ttcaatgtagGAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGA
EST: gi|32807307|gb|CD959541.1|CD959541
EST:     GATCCAACACATCATCTGCACTGGCAATCTCTGCATCAAG                         GAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTA
genomic: GATCCAACACATCATCTGCACTGGCAATCTCTGCATCAAGgtaaccttac ... ttcaatgtagGAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTA
EST: gi|40303609|gb|CK347996.1|CK347996
EST:     TGCCCGGCAAGATCCAACACATCATCTGCACTGGCAATCTCTGCATCAAG                         GAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGA
genomic: TGCCCGGCAAGATCCAACACATCATCTGCACTGGCAATCTCTGCATCAAGgtaaccttac ... ttcaatgtagGAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGA
EST: gi|50323066|gb|CO518192.1|CO518192
EST:     TGCCCGGCAAGATCCAACACATCATCTGCACTGGCAATCTCTGCATCAAG                         GAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGA
genomic: TGCCCGGCAAGATCCAACACATCATCTGCACTGGCAATCTCTGCATCAAGgtaaccttac ... ttcaatgtagGAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGA
EST: gi|18173264|gb|BM348652.1|BM348652
EST:     TGCCCGGCAAGATCCAACACATCATCTGCACTGGCAATCTCTGCATCAAG                         GAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGA
genomic: TGCCCGGCAAGATCCAACACATCATCTGCACTGGCAATCTCTGCATCAAGgtaaccttac ... ttcaatgtagGAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGA
EST: gi|211161934|gb|FL327739.1|FL327739
EST:     TGCCCGGCAAGATCCAACACATCATCTGCACTGGCAATCTCTGCATCAAG                         GAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGA
genomic: TGCCCGGCAAGATCCAACACATCATCTGCACTGGCAATCTCTGCATCAAGgtaaccttac ... ttcaatgtagGAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGA
EST: gi|32797101|gb|CD949337.1|CD949337
EST:     GATCCGACACATCATCTGCACTGGCAATCTCTGCATCAAG                         GAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGA
genomic: GATCCAACACATCATCTGCACTGGCAATCTCTGCATCAAGgtaaccttac ... ttcaatgtagGAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGA
EST: gi|18166181|gb|BM336020.1|BM336020
EST:     TGCCCGGCAAGATCCAACACATCATCTGCACTGGCAATCTCTGCATCAAG                         GAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGA
genomic: TGCCCGGCAAGATCCAACACATCATCTGCACTGGCAATCTCTGCATCAAGgtaaccttac ... ttcaatgtagGAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGA
EST: gi|91053188|gb|EB163606.1|EB163606
EST:     TGCCCGGCAAGATCCAACACATCATCTGCACTGGCAATCTCTGCATCAAG                         GAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGA
genomic: TGCCCGGCAAGATCCAACACATCATCTGCACTGGCAATCTCTGCATCAAGgtaaccttac ... ttcaatgtagGAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGA
EST: gi|211516822|gb|FL316136.1|FL316136
EST:     TGCCCGGCAAGATCCAACACATCATCTGCACTGGCAATCTCTGCATCAAG                         GAAGTCCATTACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGA
genomic: TGCCCGGCAAGATCCAACACATCATCTGCACTGGCAATCTCTGCATCAAGgtaaccttac ... ttcaatgtagGAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGA
EST: gi|32807044|gb|CD959278.1|CD959278
EST:     GATCTAACACATCATCTGCACTGGCAATCTCTGCATCAAG                         GAAGTCCATGACTACCTGAAAAGGCCTTTGCCCTGATCTCCATATTACCAG
genomic: GATCCAACACATCATCTGCACTGGCAATCTCTGCATCAAGgtaaccttac ... ttcaatgtagGAAGTCCATGACTACCTGAAAA-GCCTTTGCCCTGATCTCCATATTACCAG
EST: gi|18172676|gb|BM348064.1|BM348064
EST:     TGCCCGGCAAGATCCAACACATCATCTGCACTGGCAATCTCTGCATCAAG                         GAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGA
genomic: TGCCCGGCAAGATCCAACACATCATCTGCACTGGCAATCTCTGCATCAAGgtaaccttac ... ttcaatgtagGAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGA
EST: gi|60352727|gb|DN219700.1|DN219700
EST:     CACATCATCTGCACTGGCAATCTCTGCATCAAG                         GAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGA
genomic: CACATCATCTGCACTGGCAATCTCTGCATCAAGgtaaccttac ... ttcaatgtagGAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGA
EST: gi|18168695|gb|BM338535.1|BM338535
EST:     TGCCCGGCAAGATCCAACACATCATCTGCACTGGCAATCTCTGCATCAAG                         GAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGA
genomic: TGCCCGGCAAGATCCAACACATCATCTGCACTGGCAATCTCTGCATCAAGgtaaccttac ... ttcaatgtagGAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGA
EST: gi|6994052|gb|AW453266.1|AW453266
EST:     TGCCCGGCAAGATCCAACACATCATCTGCACTGGCAATCTCTGCATCAAG                         GAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGA
genomic: TGCCCGGCAAGATCCAACACATCATCTGCACTGGCAATCTCTGCATCAAGgtaaccttac ... ttcaatgtagGAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGA
EST: gi|211304599|gb|FL360888.1|FL360888
EST:     TGCCCGGCAAGATCCAACACATCATCTGCACTGGCAATCTCTGCATCAAG                         GAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGA
genomic: TGCCCGGCAAGATCCAACACATCATCTGCACTGGCAATCTCTGCATCAAGgtaaccttac ... ttcaatgtagGAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGA
EST: gi|16920827|gb|BM074850.1|BM074850
EST:     TGCCCGGCAAGATCCAACACATCATCTGCACTGGCAATCTCTGCATCAAG                         GAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGA
genomic: TGCCCGGCAAGATCCAACACATCATCTGCACTGGCAATCTCTGCATCAAGgtaaccttac ... ttcaatgtagGAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGA
EST: gi|211267936|gb|FL351845.1|FL351845
EST:     TGCCCGGCAAGATCCAACACATCATCTGCACTGGCAATCTCTGCATCAAG                         GAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGA
genomic: TGCCCGGCAAGATCCAACACATCATCTGCACTGGCAATCTCTGCATCAAGgtaaccttac ... ttcaatgtagGAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGA
EST: gi|18167989|gb|BM337829.1|BM337829
EST:     TGCCCGGCAAGATCCAACACATCATCTGCACTGGCAATCTCTGCATCAAG                         GAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGA
genomic: TGCCCGGCAAGATCCAACACATCATCTGCACTGGCAATCTCTGCATCAAGgtaaccttac ... ttcaatgtagGAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGA
EST: gi|211107623|gb|FL307905.1|FL307905
EST:     TGCCCGGCAAGATCCAACACATCATCTGCACTGGCAATCTCTGCATCAAG                         GAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGA
genomic: TGCCCGGCAAGATCCAACACATCATCTGCACTGGCAATCTCTGCATCAAGgtaaccttac ... ttcaatgtagGAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGA
EST: gi|28986457|gb|CB351147.1|CB351147
EST:     ATCATCTGCACTGGCAATCTCTGCATCAAG                         GAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGA
genomic: ATCATCTGCACTGGCAATCTCTGCATCAAGgtaaccttac ... ttcaatgtagGAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGA
EST: gi|211208767|gb|FL360019.1|FL360019
EST:     TGCCCGGCAAGATCCAACACATCATCTGCACTGGCAATCTCTGCATCAAG                         GAAGTCCATTACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGA
genomic: TGCCCGGCAAGATCCAACACATCATCTGCACTGGCAATCTCTGCATCAAGgtaaccttac ... ttcaatgtagGAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGA
EST: gi|67038791|gb|CO465046.1|CO465046
EST:     TGCCCGGCAAGATCCAACACATCATCTGCACTGGCAATCTCTGCATCAAG                         GAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGA
genomic: TGCCCGGCAAGATCCAACACATCATCTGCACTGGCAATCTCTGCATCAAGgtaaccttac ... ttcaatgtagGAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGA
EST: gi|17931857|gb|BM268817.1|BM268817
EST:     TGCCCGGCAAGATCCAACACATCATCTGCACTGGCAATCTCTGCATCAAG                         GAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGA
genomic: TGCCCGGCAAGATCCAACACATCATCTGCACTGGCAATCTCTGCATCAAGgtaaccttac ... ttcaatgtagGAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGA
EST: gi|18170750|gb|BM340590.1|BM340590
EST:     TGCCCGGCAAGATCCAACACATCATCTGCACTGGCAATCTCTGCATCAAG                         GAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGA
genomic: TGCCCGGCAAGATCCAACACATCATCTGCACTGGCAATCTCTGCATCAAGgtaaccttac ... ttcaatgtagGAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGA
EST: gi|17929554|gb|BM266514.1|BM266514
EST:     GCAAGATCCAACACATCATCTGCACTGGCAATCTNTGCATCAAG                         GAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGA
genomic: GCAAGATCCAACACATCATCTGCACTGGCAATCTCTGCATCAAGgtaaccttac ... ttcaatgtagGAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGA
EST: gi|211396249|gb|FL321771.1|FL321771
EST:     TGCCCGGCAAGATCCAACACATCATCTGCACTGGCAATCTCTGCATCAAG                         GAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGA
genomic: TGCCCGGCAAGATCCAACACATCATCTGCACTGGCAATCTCTGCATCAAGgtaaccttac ... ttcaatgtagGAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGA
EST: gi|17932426|gb|BM269386.1|BM269386
EST:     GCCCGGCAAGATCCAAACACATCATCTGCACTGGCAATCTCTGCATCAAG                         GAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGA
genomic: GCCCGGCAAGATCC-AACACATCATCTGCACTGGCAATCTCTGCATCAAGgtaaccttac ... ttcaatgtagGAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGA
EST: gi|211273879|gb|FL312153.1|FL312153
EST:     TGCCCGGCAAGATCCAACACATCATCTGCACTGGCAATCTCTGCATCAAG                         GAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGA
genomic: TGCCCGGCAAGATCCAACACATCATCTGCACTGGCAATCTCTGCATCAAGgtaaccttac ... ttcaatgtagGAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGA
EST: gi|211264759|gb|FL317295.1|FL317295
EST:     TGCCCGGCAAGATCCAACACATCATCTGCACTGGCAATCTCTGCATCAAG                         GAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGA
genomic: TGCCCGGCAAGATCCAACACATCATCTGCACTGGCAATCTCTGCATCAAGgtaaccttac ... ttcaatgtagGAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGA
EST: gi|32796804|gb|CD949040.1|CD949040
EST:     GATCCAACACATCATCTGCACTGGCAATCTCTGCATCAAG                         GAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGA
genomic: GATCCAACACATCATCTGCACTGGCAATCTCTGCATCAAGgtaaccttac ... ttcaatgtagGAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGA
EST: gi|18174127|gb|BM349515.1|BM349515
EST:     TGCCCGGCAAGATCCAACACATCATCTGCACTGGCAATCTCTGCATCAAG                         GAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGA
genomic: TGCCCGGCAAGATCCAACACATCATCTGCACTGGCAATCTCTGCATCAAGgtaaccttac ... ttcaatgtagGAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGA
EST: gi|91874254|gb|EB404211.1|EB404211
EST:     CACTGGCAATCTCTGCATCAAG                         GAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGA
genomic: CACTGGCAATCTCTGCATCAAGgtaaccttac ... ttcaatgtagGAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGA
EST: gi|91053189|gb|EB163607.1|EB163607
EST:     TGCCCGGCAAGATCCAACACATCATCTGCACTGGCAATCTCTGCATCAAG                         GAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGA
genomic: TGCCCGGCAAGATCCAACACATCATCTGCACTGGCAATCTCTGCATCAAGgtaaccttac ... ttcaatgtagGAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGA
EST: gi|71770168|gb|DR968105.1|DR968105
EST:     CAAGATCCAACACATCATCTGCACTGGCAATCTCGGCATCAAG                         GAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATTTCCATATTACCAGA
genomic: CAAGATCCAACACATCATCTGCACTGGCAATCTCTGCATCAAGgtaaccttac ... ttcaatgtagGAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGA
EST: gi|60340839|gb|DN207812.1|DN207812
EST:     TGCCCGGCAAGATCCAACACATCATCTGCACTGGCAATCTCTGCATCAAG                         GAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGA
genomic: TGCCCGGCAAGATCCAACACATCATCTGCACTGGCAATCTCTGCATCAAGgtaaccttac ... ttcaatgtagGAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGA
EST: gi|60346136|gb|DN213109.1|DN213109
EST:     CAAGATCCAACACATCATCTGCACTGGCAATCTTTGCATCAAG                         GAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGA
genomic: CAAGATCCAACACATCATCTGCACTGGCAATCTCTGCATCAAGgtaaccttac ... ttcaatgtagGAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGA
EST: gi|211399855|gb|FL354709.1|FL354709
EST:     TGCCCGGCAAGATCCAACACATCATCTGCACTGGCAATCTCTGCATCAAG                         GAAGTCCATTACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGA
genomic: TGCCCGGCAAGATCCAACACATCATCTGCACTGGCAATCTCTGCATCAAGgtaaccttac ... ttcaatgtagGAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGA
EST: gi|211409092|gb|FL321366.1|FL321366
EST:     TGCCCGGCAAGATCCAACACATCATCTGCACTGGCAATCTCTGCATCAAG                         GAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGA
genomic: TGCCCGGCAAGATCCAACACATCATCTGCACTGGCAATCTCTGCATCAAGgtaaccttac ... ttcaatgtagGAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGA
EST: gi|17929791|gb|BM266751.1|BM266751
EST:     ATCCAACACATCATCTGCACTGGCAATCTCTGCATCAAG                         GAAGTCCATGACTACCTGAAAAGCCCTTTGCCCTGATCTCCATATTACCAG
genomic: ATCCAACACATCATCTGCACTGGCAATCTCTGCATCAAGgtaaccttac ... ttcaatgtagGAAGTCCATGACTACCTGAAAAG-CCTTTGCCCTGATCTCCATATTACCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gagtgtttttgttctgatgaaatagagagtaataattctcataatttcaatgtagGAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGAGGTGAACATGATGAGGATGCTCGATACCCAGAGACTAAGACACTTACAA
           ttctgat  putative branch site (score: 3)
                             taataattctcataat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
atggtatcccatttttctattgcagattgatggtttgtatgaactgagtgtttttgttctgatgaaatagagagtaataattctcataatttcaatgtagGAAGTCCATGACTACCTGAAAAGCCTTTGCCCTGATCTCCATATTACCAGAGGTGAACATGATGAGGATGCTCGATACCCAGAGACTAAGACACTTACAA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - ctattgc
- - - - - - - - - - - - -attgatg
- - - - - - - - - - - - - - - - - - - -tgaactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaataga