1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...gcattctgattccgtcagtagtggaaaggttgcagtcaaagcttttggttttgcattttcagtcacagagtcactgacagtgcatgttattgttgtgcagCTGCTACTGGGCTATCTGCCCAATGACCGCTCGCTGTGGGAGCAGGAGCTGGCAAAGAAGAGAGGGCAGTACGCTGCTTTCAAAGATGAGTTCCTTACAA
species | Zea mays |
transcript | GRMZM2G068392_T04 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGGCTCAGGGAGTCCCAGACGCGGCGGGCGTCCGAGCAACTGTATGGAAG CTGCTACTGGGCTATCTGCCCAATGACCGCTCGCTGTGGGAGCAGGAGCTGEST: gi|211273924|gb|FL314979.1|FL314979
genomic: CGGCTCAGGGAGTCCCAGACGCGGCGGGCGTCCGAGCAACTGTATGGAAGgtacttgatt ... tgttgtgcagCTGCTACTGGGCTATCTGCCCAATGACCGCTCGCTGTGGGAGCAGGAGCTG
EST: CGGCTCAGGGAGTCCCAGACGCGGCGGGCGTCCGAGCAACTGTATGGAAG CTGCTACTGGGCTATCTGCCCAATGACCGCTCGCTGTGGGAGCAGGAGCTGEST: gi|50331308|gb|CO526434.1|CO526434
genomic: CGGCTCAGGGAGTCCCAGACGCGGCGGGCGTCCGAGCAACTGTATGGAAGgtacttgatt ... tgttgtgcagCTGCTACTGGGCTATCTGCCCAATGACCGCTCGCTGTGGGAGCAGGAGCTG
EST: CGGCTCAGGGAGTCCCAGACGCGGCGGGCGTCCGAGCAACTGTATGGAAG CTGCTACTGGGCTATCTGCCCAATGACCGCTCGCTGTGGGAGCAGGAGCTGEST: gi|88753106|gb|DY537247.1|DY537247
genomic: CGGCTCAGGGAGTCCCAGACGCGGCGGGCGTCCGAGCAACTGTATGGAAGgtacttgatt ... tgttgtgcagCTGCTACTGGGCTATCTGCCCAATGACCGCTCGCTGTGGGAGCAGGAGCTG
EST: CGGCTCAGGGAGTCCCAGACGCGGCGGGCGTCCGAGCAACTGTATGGAAG CTGCTACTGGGCTATCTGCCCAATGACCGCTCGEST: gi|78106604|gb|DV525022.1|DV525022
genomic: CGGCTCAGGGAGTCCCAGACGCGGCGGGCGTCCGAGCAACTGTATGGAAGgtacttgatt ... tgttgtgcagCTGCTACTGGGCTATCTGCCCAATGACCGCTCG
EST: CGGCTCAGGGAGTCCCAGACGCGGCGGGCGTCCGAGCAACTGTATGGAAG CTGCTACTGGGCTATCTGCCCAATGACCGCTCGCTGTGGGAGCAGGAGCTGEST: gi|71438417|gb|DR819467.1|DR819467
genomic: CGGCTCAGGGAGTCCCAGACGCGGCGGGCGTCCGAGCAACTGTATGGAAGgtacttgatt ... tgttgtgcagCTGCTACTGGGCTATCTGCCCAATGACCGCTCGCTGTGGGAGCAGGAGCTG
EST: CGGCTCAGGGAGTCCCAGACGCGGCGGGCGTCCGAGCAACTGTATGGAAG CTGCTACTGGGCTATCTGCCCAATGACCGCTCGCTGTGGGAGCAGGAGCTG
genomic: CGGCTCAGGGAGTCCCAGACGCGGCGGGCGTCCGAGCAACTGTATGGAAGgtacttgatt ... tgttgtgcagCTGCTACTGGGCTATCTGCCCAATGACCGCTCGCTGTGGGAGCAGGAGCTG
tggttttgcattttcagtcacagagtcactgacagtgcatgttattgttgtgcagCTGCTACTGGGCTATCTGCCCAATGACCGCTCGCTGTGGGAGCAGGAGCTGGCAAAGAAGAGAGGGCAGTACGCTGCTTTCAAAGATGAGTTCCTTACAA
cactgac putative branch site (score: 2)
atgttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcattctgattccgtcagtagtggaaaggttgcagtcaaagcttttggttttgcattttcagtcacagagtcactgacagtgcatgttattgttgtgcagCTGCTACTGGGCTATCTGCCCAATGACCGCTCGCTGTGGGAGCAGGAGCTGGCAAAGAAGAGAGGGCAGTACGCTGCTTTCAAAGATGAGTTCCTTACAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG