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...tttagactatgttgcgttttatcctttttgtcaatgagtgaaagaataaataaaatcttcacctgaactttgaaagcatctgcttttgtgttgattacagGACATGGTTGATTATCAGAGAACTTTGGCTAGGGAGATTGAAGCCCGGTTAGAAGCCAAGTGTGATGCTTTGGCTGATCTATTTGCTATGGATGAAAGGG
species | Zea mays |
transcript | GRMZM2G068277_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTTCTGATTATCTCTACCAAGTGCAACAAGAGCAGCCAGCCATGTCTGTT GACATGGTTGATTATCAGAGAACTTTGGCTAGGGAGATTGAAGCCCGGTTAEST: gi|71443221|gb|DR824271.1|DR824271
genomic: CTTCTGATTATCTCTACCAAGTGCAACAAGAGCAGCCAGCCATGTCTGTTgtaagaacat ... ttgattacagGACATGGTTGATTATCAGAGAACTTTGGCTAGGGAGATTGAAGCCCGGTTA
EST: CTTCTGATTATCTCTACCAAGTGCAACAAGAGCAGCCAGCCATGTCTGTT GACATGGTTGATTATCAGAGAACTTTGGCTAGGGAGATTGAAGCCCGGTTAEST: gi|5895704|gb|AW036950.1|AW036950
genomic: CTTCTGATTATCTCTACCAAGTGCAACAAGAGCAGCCAGCCATGTCTGTTgtaagaacat ... ttgattacagGACATGGTTGATTATCAGAGAACTTTGGCTAGGGAGATTGAAGCCCGGTTA
EST: GATTATCTCTACCAAGTGCAACAAGAGCAGCCAGCCATGTCTGTT GACATGGTTGATTATCAGAGAACTTTGGCTAGGGAGATTGAAGCCCGGTTAEST: gi|60337416|gb|DN204389.1|DN204389
genomic: GATTATCTCTACCAAGTGCAACAAGAGCAGCCAGCCATGTCTGTTgtaagaacat ... ttgattacagGACATGGTTGATTATCAGAGAACTTTGGCTAGGGAGATTGAAGCCCGGTTA
EST: CTTCTGATTATCTCTACCAAGTGCAACAAGAGCAGCCAGCCATGTCTGTT GACATGGTTGATTATCAGAGAACTTTGGCTAGGGAGATTGAAGCCCGGTTA
genomic: CTTCTGATTATCTCTACCAAGTGCAACAAGAGCAGCCAGCCATGTCTGTTgtaagaacat ... ttgattacagGACATGGTTGATTATCAGAGAACTTTGGCTAGGGAGATTGAAGCCCGGTTA
ataaataaaatcttcacctgaactttgaaagcatctgcttttgtgttgattacagGACATGGTTGATTATCAGAGAACTTTGGCTAGGGAGATTGAAGCCCGGTTAGAAGCCAAGTGTGATGCTTTGGCTGATCTATTTGCTATGGATGAAAGGG
tgttgat putative branch site (score: 4)
taaaatctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttagactatgttgcgttttatcctttttgtcaatgagtgaaagaataaataaaatcttcacctgaactttgaaagcatctgcttttgtgttgattacagGACATGGTTGATTATCAGAGAACTTTGGCTAGGGAGATTGAAGCCCGGTTAGAAGCCAAGTGTGATGCTTTGGCTGATCTATTTGCTATGGATGAAAGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - atgttgc
- - - - - - - - - - - - - - - - - - - -gaaagaat
- - - - - - - - - - - - - - - - - - - - - - - -aaataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcatctg