1 5' 3' | 2 5' 3' | 3 5' 3' |
gtcagccccttggccctgacttgtacaacctttatttccaaatatgccactaattatgtctgtcctttagGCTGGTTTTGCTGGGGACGATGCACCAAGGGCGGTTTTCCCTAGCATTGTTGGCCGTCCTCGCCACACTGGTGTCATGGTAGGGATGGGACAGAAGGATG
species | Zea mays |
transcript | GRMZM2G067985_T03 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACCGGAATGGTCAAG GCTGGTTTTGCTGGGGACGATGCACCAAGGGCGGTTTTCCCTAGCATTGTTEST: gi|31355571|gb|CD439928.1|CD439928
genomic: GTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACCGGAATGGTCAAGgtcagcccct ... tgtcctttagGCTGGTTTTGCTGGGGACGATGCACCAAGGGCGGTTTTCCCTAGCATTGTT
EST: GTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACCGGAATGGTCAAG GCTGGTTTTGCTGGGGACGATGCACCAAGGGCGGTTTTCCCTAGCATTGTTEST: gi|30306784|gb|CD001457.1|CD001457
genomic: GTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACCGGAATGGTCAAGgtcagcccct ... tgtcctttagGCTGGTTTTGCTGGGGACGATGCACCAAGGGCGGTTTTCCCTAGCATTGTT
EST: GTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACTGGAATGGTCAAG GCTGGTTTTGCTGGCGATGATGCACCAAGGGCGGTTTTCCCTAGCATTGTTEST: gi|211380786|gb|FK990764.1|FK990764
genomic: GTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACCGGAATGGTCAAGgtcagcccct ... tgtcctttagGCTGGTTTTGCTGGGGACGATGCACCAAGGGCGGTTTTCCCTAGCATTGTT
EST: GTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACTGGAATGGTCAAG GCTGGTTTTGCTGGCGATGATGCACCAAGGGCGGTTTTCCCTAGCATTGTT
genomic: GTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACCGGAATGGTCAAGgtcagcccct ... tgtcctttagGCTGGTTTTGCTGGGGACGATGCACCAAGGGCGGTTTTCCCTAGCATTGTT
ctgacttgtacaacctttatttccaaatatgccactaattatgtctgtcctttagGCTGGTTTTGCTGGGGACGATGCACCAAGGGCGGTTTTCCCTAGCATTGTTGGCCGTCCTCGCCACACTGGTGTCATGGTAGGGATGGGACAGAAGGATG
cactaat putative branch site (score: 2)
tctgtccttt putative PPT
tttatttccaaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagccccttggccctgacttgtacaacctttatttccaaatatgccactaattatgtctgtcctttagGCTGGTTTTGCTGGGGACGATGCACCAAGGGCGGTTTTCCCTAGCATTGTTGGCCGTCCTCGCCACACTGGTGTCATGGTAGGGATGGGACAGAAGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG