1 5' 3' | 2 5' 3' | 3 5' 3' |
...tgcatcatgtatatgtgctcccttccgtttcatatgacggcaaatcaatcccatatgttctcatagcatctgcatggacttattgtaaaacctattgcagGACTGCCTATGATGTGTCCATTAATGACGACTCTTGGCCAACAGAAGTGTTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCC
species | Zea mays |
transcript | GRMZM2G067476_T03 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGCGTCGAGCGCGTCGCCGTCTCCCTCGACCTCTACAACCAGGGATCCGC GACTGCCTATGATGTGTCCATTAATGACGACTCTTGGCCAACAGAAGTGTTEST: gi|161590160|gb|EY960637.1|EY960637
genomic: GGCGTCGAGCGCGTCGCTGTCTCCCTCGACCTCTACAACCAGGGATCCGCgtgagcaccg ... cctattgcagGACTGCCTATGATGTGTCCATTAATGACGACTCTTGGCCAACAGAAGTGTT
EST: GGCGTCGAGCGCGTCGCCGTCTCCCTCGACCTCTACAACCAGGGATCCGC GACTGCCTATGATGTGTCCATTAATGACGACTCTTGGCCAACA
genomic: GGCGTCGAGCGCGTCGCTGTCTCCCTCGACCTCTACAACCAGGGATCCGCgtgagcaccg ... cctattgcagGACTGCCTATGATGTGTCCATTAATGACGACTCTTGGCCAACA
caatcccatatgttctcatagcatctgcatggacttattgtaaaacctattgcagGACTGCCTATGATGTGTCCATTAATGACGACTCTTGGCCAACAGAAGTGTTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCC
ttattgtaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgcatcatgtatatgtgctcccttccgtttcatatgacggcaaatcaatcccatatgttctcatagcatctgcatggacttattgtaaaacctattgcagGACTGCCTATGATGTGTCCATTAATGACGACTCTTGGCCAACAGAAGTGTTTGAGCTTGTCACTGGAGAGAAATCGAAGACATTGGAAAGGCTTGACCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA