1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...aggaacatggcctgtgttgtatgtttcatagtacccgttagcattttctgtccttattggtcttgtgttgtctttattttctttcttttttcctgaacagGGGTACAAAGATGCACTTATGCAGGTCCAGGTTTTAAGAGTAAATTGCAGCACTGAGTTCAAAAGGCGGGAAGCTCTTGAATCACATATTACAGATCTTA
species | Zea mays |
transcript | GRMZM2G067350_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGGACGAGGATCTGG-ATCGCTGCTCCAGAACTTCCATCGCGTGTCCCAG GGGTACAAAKATGCACTTATGCAGGTCCAGGTTTTAAGAGTANATTGCAGCEST: gi|149016977|gb|EE045644.2|EE045644
genomic: GGGATGAGGATCTGGAATCGCTGCTCCAGAACTTCCATCGCGTGTCCCAGgtactcgata ... tcctgaacagGGGTACAAAGATGCACTTATGCAGGTCCAGGTTTTAAGAGTAAATTGCAGC
EST: GGGATGAGGATCTGGAATCGCTGCTCCAGAACTTCCATCGCGTGTCCCAG GGGTACAAAGATGCACTTATGCAGGTCCAGGTTTTAAGAGTAAATTGCAGC
genomic: GGGATGAGGATCTGGAATCGCTGCTCCAGAACTTCCATCGCGTGTCCCAGgtactcgata ... tcctgaacagGGGTACAAAGATGCACTTATGCAGGTCCAGGTTTTAAGAGTAAATTGCAGC
ttctgtccttattggtcttgtgttgtctttattttctttcttttttcctgaacagGGGTACAAAGATGCACTTATGCAGGTCCAGGTTTTAAGAGTAAATTGCAGCACTGAGTTCAAAAGGCGGGAAGCTCTTGAATCACATATTACAGATCTTA
tcttgtgttgtcttta CT-rich tract
tctttattttctttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aggaacatggcctgtgttgtatgtttcatagtacccgttagcattttctgtccttattggtcttgtgttgtctttattttctttcttttttcctgaacagGGGTACAAAGATGCACTTATGCAGGTCCAGGTTTTAAGAGTAAATTGCAGCACTGAGTTCAAAAGGCGGGAAGCTCTTGAATCACATATTACAGATCTTA
- gaacatg
- - - - - - tgtgttg
- - - - - - - - - - -tgtttca
- - - - - - - - - - - - - - - - - - - - - -ttttctg