Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gattgtgcattttgtgagcatgcactgaatatgatggatatgtttggaggaagcattattccaatttgatgataatggtgttatttacacttgttttcagCTTGGCAAGGTACTGCGGCTCAAGAAGATTCTAAAAAACAAGTCGCAGCGGGCACCAAGTTGTATTGTATTCTCAAGTCATGAGCAACTCCTGTGGGGCC

Basic information

species Zea mays
transcript GRMZM2G067299_T06
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G067299_T02 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os04g56580.1 (Oryza sativa), 3'ss of exon 2
gattgtgcattttgtgagcatgcactgaatatgatggatatgtttggaggaagcattattccaatttgatgataatggtgttat--ttacacttgttt--tcagCTTGGCAAGGTACTGCGGCTCAAGAAGATTCTAAAAAACAAGTCGCAGCGGGCACCAAGTTGTATTGTATTCTCAAGTCATGAGCAACTCCTGTGGGGCC
          ||    |  ||     |  | |||   |  | ||  |         |||   |  || |    ||   |||| |  | |   ||  ||   |||||||||||||| |||||  |||| |||||||||||| |||||   || | ||||||||  ||||| || ||||||||||||||| |||  ||||||||| 
----acttggttgactaaaatttttagtttgtgaccaaagtattatgtttccctcgtatgatatgtttacaggaaaaatgttttgatgatgttttcttgaacagCTTGGCAAGGTTCTGCGAGTCAAAAAGATTCTAAAAGACAAGGGACAACCGGCACCAAACTGTATAGTCTTCTCAAGTCATGAGGAACATCTGTGGGGCA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149058014|gb|EE156697.2|EE156697
EST:     AAGGCGCCGCGAATCTTATCCTCAGCTACACCGGCTCGTCGCCCTCCATG                         CTTGGCAAGGTACTGCGGCTCAAGAAGATTCTAAAAAACAAGTCGCAGCGG
genomic: AAGGCGCCGCGAATCTTATCCTCAGCTACACCGGCTCGTCGCCCTCCATGgtaagcgctg ... ttgttttcagCTTGGCAAGGTACTGCGGCTCAAGAAGATTCTAAAAAACAAGTCGCAGCGG
EST: gi|211198332|gb|FL351292.1|FL351292
EST:     AAGGCGCCGCGAATCTTATCCTCAGCTACACCGGCTCGTCGCCCTCCATG                         CTTGGCAAGGTACTGCGGCTCAAGAAGATTCTAAAAAACAAGTCGCAGCGG
genomic: AAGGCGCCGCGAATCTTATCCTCAGCTACACCGGCTCGTCGCCCTCCATGgtaagcgctg ... ttgttttcagCTTGGCAAGGTACTGCGGCTCAAGAAGATTCTAAAAAACAAGTCGCAGCGG
EST: gi|211060902|gb|FL310715.1|FL310715
EST:     AAGGCGCCGCGAATCTTATCCTCAGCTACACCGGCTCGTCGCCCTCCATG                         CTTGGGAAGGTACTGCGGCTCAAGAAGATTCTAAAAAA
genomic: AAGGCGCCGCGAATCTTATCCTCAGCTACACCGGCTCGTCGCCCTCCATGgtaagcgctg ... ttgttttcagCTTGGCAAGGTACTGCGGCTCAAGAAGATTCTAAAAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggaggaagcattattccaatttgatgataatggtgttatttacacttgttttcagCTTGGCAAGGTACTGCGGCTCAAGAAGATTCTAAAAAACAAGTCGCAGCGGGCACCAAGTTGTATTGTATTCTCAAGTCATGAGCAACTCCTGTGGGGCC
                  atttgat  putative branch site (score: 5)
                                            cttgttttc  putative PPT
                 aatttgatgataat  TA-rich tract