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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctggccggcggccgttcaccgcagcatctcaagagatcctcagatcccctccactcttctccccccctgatgatcaacaccaaccgtcgtcccccgttgcagGTTCTCGGCGCGCTGCCGTTGCCGCTGCCGTACACCATCACAGCCTTCCAGCTCGCGTTCGGCTCCCTGCTCATCTTCCTCATGTGGGCCACCAGGCTCC

Basic information

species Zea mays
transcript GRMZM2G066413_T02
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G066413_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os01g07730.1 (Oryza sativa), 3'ss of exon 1
gtctggccggcggccgttcaccgcagcatctcaagagatcctcagatcccctcca----ctcttctccccccctgatgatcaacaccaaccgtcgtcccccgttgcagGTTCTCGGCGC-GCTGCCGTTGCCGCTGCCGTACACCATCACAGCCTTCCAGCTCGCGTTCGGCTCCCTGCTCATCTTCCTCATGTGGGCCACCAGGCTCC------
                                      || ||    |||||| |    ||  ||   || | |  |   || | |  | |    ||  || | |    |    || || || ||| |||||| | || ||||||||||| |||||||||||||||||||||||| |  |||||||||||||||||||   || ||| |      
-------------------------------------gtcttcctcccccctcaagaaccttctccttcctcatcctcgccatctcttaacccaatcagccatggagaatctcagGTGCTGCAGCCATTGCCGTTCCCCTACACCATCACCGCCTTCCAGCTCGCGTTCGGCTCCTTCGTCATCTTCCTCATGTGGGCGCTCAAGCTTCATCCCG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cctccactcttctccccccctgatgatcaacaccaaccgtcgtcccccgttgcagGTTCTCGGCGCGCTGCCGTTGCCGCTGCCGTACACCATCACAGCCTTCCAGCTCGCGTTCGGCTCCCTGCTCATCTTCCTCATGTGGGCCACCAGGCTCC
                 ccctgat  putative branch site (score: 4)
                                       tcgtccccc  putative PPT