Sequence
atgc intronic sequence ATGC exonic sequence...tcataaggaattactttgctctttgtaccattcaatacgtgagagaaagactcgaccctatcatgattccgatatgacttacacgccgtttacaatgcagGTTCCAATGTTCGAAAACATGGACGACCAACTCCTGGACGCAATGTGCGACCGTGTGAAACCCATGCTGTACACAGAAGGAAGCCACATCGTTCGCGAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G066269_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os02g15580.1 (Oryza sativa), 3'ss of exon 5
tcataaggaattactttgctctttgtaccattcaatacgtgagaga-aagactcgaccctatcatgattccgatatgacttacacgccgtttacaa-----tgcagGTTCCAATGTTCGAAAACATGGACGACCAACTCCTGGACGCAATGTGCGACCGTGTGAAACCCATGCTGTACACAGAAGGAAGCCACATCGTTCGCGAAG
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-----ggtcattgatg-gcttaatacaaagattcctagttagctgataattaccggctatccctttagttaattaatcccttcattctttttctcaccatttgcagGTTCCAATGTTTGAAAACATGGATGAGAAGCTCTTGGATGCCATGTGTGATCGTCTAAAGCCCATGCTGTACACAGAAGGCAGCTGCATCATTCGCGAAG
upper sequence: GRMZM2G066269_T01 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA14G31940.1 (Glycine max), 3'ss of exon 6
tcataaggaattactttgctctttgtaccattcaatacgtgagagaaagactcgaccctatcatgatt----ccgatatgacttacacgccgtttacaatgcagGTTCCAATGTTCGAAAACATGGACGACCAACTCCTGGACGCAATGTGCGACCGTGTGAAACCCATGCTGTACACAGAAGGAAGCCACATCGTTCGCGAAG
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--gattttaatgacattgctattggaaaaat-caaaagctattgccaattttcagtttaattttagtaaaaaccaaccaaatcttctc-ttgtacggacttcagGTGCCAATGTTTGAGAAAATGGACGAACAACTTCTGGATGCAATGTGCGACCTTCTCAAGCCAGTGCTTTACACAGAAGAAAGCTACATTGTCCGGGAGG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aaagactcgaccctatcatgattccgatatgacttacacgccgtttacaatgcagGTTCCAATGTTCGAAAACATGGACGACCAACTCCTGGACGCAATGTGCGACCGTGTGAAACCCATGCTGTACACAGAAGGAAGCCACATCGTTCGCGAAG
gacttac putative branch site (score: 2)
tttacaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tcataaggaattactttgctctttgtaccattcaatacgtgagagaaagactcgaccctatcatgattccgatatgacttacacgccgtttacaatgcagGTTCCAATGTTCGAAAACATGGACGACCAACTCCTGGACGCAATGTGCGACCGTGTGAAACCCATGCTGTACACAGAAGGAAGCCACATCGTTCGCGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - tgctctt
- - - - - - - - - - - - - - cattcaa
- - - - - - - - - - - - - - - - - - - - gagagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cacgccg