Sequence
atgc intronic sequence ATGC exonic sequence...cgctagttggatttggactttggagaccagaccagattgttgacctctggtagcacataggatgcgatcgactgacgcttcccgcttgatttgtctgcagAAATGGGTTCCAGAAGCTGGAGAAGATCAAGGATGCCAACCGCCGCAGCAGGCAGCTTGAAGAGCTTACTGATAAGATGCGAGACTGCAAGAGGTTGCTC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G065105_T03 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os06g50120.2 (Oryza sativa), 3'ss of exon 1
--cgctagttggatttgga--ctttggagaccagaccagattgttgacctctggtagcacataggatgcgatcgactgacgctt--cccgcttgatttgtctgcagAAATGGGTTCCAGAAGCTGGAGAAGATCAAGGATGCCAACCGCCGCAGCAGGCAGCTTGAAGAGCTTACTGATAAGATGCGAGACTGCAAGAGGTTGCTC
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tgcaaaaaataaaaataaaatctttgtagtgtaatgcggcaaaaagacg---ggtttgacttaga---tgatagattgataattaatctgcttcatttgtccacagAAATGGGTTCCAGAAGCTGGATAAGATCAAGGATGCCAATCGACGGAGCAGGCAACTCGAAGAGCTCACTGATAAGATGCGGGATTGCAAGAG-------
upper sequence: GRMZM2G065105_T03 (Zea mays), 3'ss of exon 1
lower sequence: AT2G35190.1 (Arabidopsis thaliana), 3'ss of exon 1
cgctagttggatttggactttggagaccagaccagattgttgacctctggtagcacataggatgcgatcgactgacgcttcc-cgcttgatttgtctgcagAAATGGGTTCCAGAAGCTGGAGAAGATCAAGGATGCCAACCGCCGCAGCAGGCAGCTTGAAGAGCTTACTGATAAGATGCGAGACTGCAAGAGGTTGCTC
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-----gtgagaatgaatctctc---tctagcgttttctctccatttgtgatttggtatttgtgtctatataataatgttttgatgtttttgttttctacagAAATGGATTCCAGAAGCTGGAGAAGATCAAAGATGCTAATAGGCAGAGTAGGCAGCTGGAAGAACTCACTGACAAAATGCGTGACTGTAAGAG-------
upper sequence: GRMZM2G065105_T03 (Zea mays), 3'ss of exon 1
lower sequence: Vv02s0012g00140.t01 (Vitis vinifera), 3'ss of exon 1
---------cgctagttggatttggactttggagaccagaccagattgttgacctctggtagcacataggatgcgatcgactgacgcttcccgcttgatttgtctgcagAAATGGGTTCCAGAAGCTGGAGAAGATCAAGGATGCCAACCGCCGCAGCAGGCAGCTTGAAGAGCTTACTGATAAGATGCGAGACTGCAAGAGGTTGCTC
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aaaacaatgcattatttatgtttaaccattggtgcttgtcctatattacc---------tagcaaattatcttctttaaggtaatctaattttctatgtatttttacagTAATGGGTTCCAGAAGTTGGAGAAGATCAAAGACACGAGTAGGCAGAGCAGGCAGCTGGAAGAGCTTACGGGGAAGATGAGAGAGTGTAAGAG-------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211357106|gb|FL231552.1|FL231552EST: GAGCTGGCCGAGATCGACGGGCAGATCGGCGATATCCTCCGCGTATTGCA AAATGGGTTCCAGAAGCTGGAGAAGATCAAGGATGCCAACCGCCGCAGCAG
genomic: GAGCTGGCCGAGATCGACGGGCAGATCGGCGATATCCTCCGCGTATTGCAgtaagctcgc ... ttgtctgcagAAATGGGTTCCAGAAGCTGGAGAAGATCAAGGATGCCAACCGCCGCAGCAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tctggtagcacataggatgcgatcgactgacgcttcccgcttgatttgtctgcagAAATGGGTTCCAGAAGCTGGAGAAGATCAAGGATGCCAACCGCCGCAGCAGGCAGCTTGAAGAGCTTACTGATAAGATGCGAGACTGCAAGAGGTTGCTC
tttgtct CT-rich tract
ttgattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
cgctagttggatttggactttggagaccagaccagattgttgacctctggtagcacataggatgcgatcgactgacgcttcccgcttgatttgtctgcagAAATGGGTTCCAGAAGCTGGAGAAGATCAAGGATGCCAACCGCCGCAGCAGGCAGCTTGAAGAGCTTACTGATAAGATGCGAGACTGCAAGAGGTTGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG