1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...cgctagttggatttggactttggagaccagaccagattgttgacctctggtagcacataggatgcgatcgactgacgcttcccgcttgatttgtctgcagAAATGGGTTCCAGAAGCTGGAGAAGATCAAGGATGCCAACCGCCGCAGCAGGCAGCTTGAAGAGCTTACTGATAAGATGCGAGACTGCAAGAG
species | Zea mays |
transcript | GRMZM2G065105_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GAGCTGGCCGAGATCGACGGGCAGATCGGCGATATCCTCCGCGTATTGCA AAATGGGTTCCAGAAGCTGGAGAAGATCAAGGATGCCAACCGCCGCAGCAGEST: gi|211162284|gb|FL231527.1|FL231527
genomic: GAGCTGGCCGAGATCGACGGGCAGATCGGCGATATCCTCCGCGTATTGCAgtaagctcgc ... ttgtctgcagAAATGGGTTCCAGAAGCTGGAGAAGATCAAGGATGCCAACCGCCGCAGCAG
EST: GAGCTGGCCGAGATCGACGGGCAGATCGGCGATATCCTCCGCGTATTGCA AAATGGGTTCCAGAAGCTGGAGAAGATCAAGGATGCCAACCGCCGCAGCAGEST: gi|211163879|gb|FL231538.1|FL231538
genomic: GAGCTGGCCGAGATCGACGGGCAGATCGGCGATATCCTCCGCGTATTGCAgtaagctcgc ... ttgtctgcagAAATGGGTTCCAGAAGCTGGAGAAGATCAAGGATGCCAACCGCCGCAGCAG
EST: GAGCTGGCCGAGATCGACGGGCAGATCGGCGATATCCTCCGCGTATTGCA AAATGGGTTCCAGAAGCTGGAGAAGATCAAGGATGCCAACCGCCGCAGCAGEST: gi|211162277|gb|FL231520.1|FL231520
genomic: GAGCTGGCCGAGATCGACGGGCAGATCGGCGATATCCTCCGCGTATTGCAgtaagctcgc ... ttgtctgcagAAATGGGTTCCAGAAGCTGGAGAAGATCAAGGATGCCAACCGCCGCAGCAG
EST: GAGCTGGCCGAGATCGACGGGCAGATCGGCGATATCCTCCGCGTATTGCA AAATGGGTTCCAGAAGCTGGAGAAGATCAAGGATGCCAACCGCCGCAGCAGEST: gi|211357112|gb|FL231558.1|FL231558
genomic: GAGCTGGCCGAGATCGACGGGCAGATCGGCGATATCCTCCGCGTATTGCAgtaagctcgc ... ttgtctgcagAAATGGGTTCCAGAAGCTGGAGAAGATCAAGGATGCCAACCGCCGCAGCAG
EST: GAGCTGGCCGAGATCGACGGGCAGATCGGCGATATCCTCCGCGTATTGCA AAATGGGTTCCAGAAGCTGGAGAAGATCAAGGATGCCAACCGCCGCAGCAGEST: gi|211357114|gb|FL231560.1|FL231560
genomic: GAGCTGGCCGAGATCGACGGGCAGATCGGCGATATCCTCCGCGTATTGCAgtaagctcgc ... ttgtctgcagAAATGGGTTCCAGAAGCTGGAGAAGATCAAGGATGCCAACCGCCGCAGCAG
EST: GAGCTGGCCGAGATCGACGGGCAGATCGGCGATATCCTCCGCGTATTGCA AAATGGGTTCCAGAAGCTGGAGAAGATCAAGGATGCCAACCGCCGCAGCAG
genomic: GAGCTGGCCGAGATCGACGGGCAGATCGGCGATATCCTCCGCGTATTGCAgtaagctcgc ... ttgtctgcagAAATGGGTTCCAGAAGCTGGAGAAGATCAAGGATGCCAACCGCCGCAGCAG
tctggtagcacataggatgcgatcgactgacgcttcccgcttgatttgtctgcagAAATGGGTTCCAGAAGCTGGAGAAGATCAAGGATGCCAACCGCCGCAGCAGGCAGCTTGAAGAGCTTACTGATAAGATGCGAGACTGCAAGAG
tttgtct CT-rich tract
ttgattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgctagttggatttggactttggagaccagaccagattgttgacctctggtagcacataggatgcgatcgactgacgcttcccgcttgatttgtctgcagAAATGGGTTCCAGAAGCTGGAGAAGATCAAGGATGCCAACCGCCGCAGCAGGCAGCTTGAAGAGCTTACTGATAAGATGCGAGACTGCAAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA