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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gacagtttcttgcgacttcgcgacagaagtgagcatctttcttttgatacagttatagaaaatcttttctagtgcactgatgatattctgatgtacccagACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGAGGGAAGGATTCTCGCATATAACTGTCACAGGTGCTCTTGCTCACGGGAC

Basic information

species Zea mays
transcript GRMZM2G064371_T01
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211479968|gb|FL426382.1|FL426382
EST:     CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAG                         ACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
genomic: CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAGgtgcacctcc ... atgtacccagACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
EST: gi|211319739|gb|FL417601.1|FL417601
EST:     CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAG                         ACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
genomic: CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAGgtgcacctcc ... atgtacccagACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
EST: gi|211507888|gb|FL229579.1|FL229579
EST:     CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAG                         ACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
genomic: CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAGgtgcacctcc ... atgtacccagACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
EST: gi|211168125|gb|FL415650.1|FL415650
EST:     CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAG                         ACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
genomic: CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAGgtgcacctcc ... atgtacccagACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
EST: gi|211513788|gb|FL164971.1|FL164971
EST:     CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAG                         ACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGAGCAACTACGGGA
genomic: CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAGgtgcacctcc ... atgtacccagACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
EST: gi|211169796|gb|FL413912.1|FL413912
EST:     CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCNAG                         ACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
genomic: CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAGgtgcacctcc ... atgtacccagACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
EST: gi|211516144|gb|FL164988.1|FL164988
EST:     CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAG                         ACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGAGCAACTACGGGA
genomic: CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAGgtgcacctcc ... atgtacccagACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
EST: gi|211513789|gb|FL164972.1|FL164972
EST:     CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAG                         ACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGAGCAACTACGGGA
genomic: CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAGgtgcacctcc ... atgtacccagACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
EST: gi|18659565|gb|BM500404.1|BM500404
EST:     CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAG                         ACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
genomic: CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAGgtgcacctcc ... atgtacccagACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
EST: gi|19351476|gb|BM896008.1|BM896008
EST:     CGCGGGCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAG                         ACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGAGCAACTACGGGA
genomic: CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAGgtgcacctcc ... atgtacccagACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
EST: gi|211516140|gb|FL164984.1|FL164984
EST:     CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAG                         ACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGAGCAACTACGGGA
genomic: CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAGgtgcacctcc ... atgtacccagACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
EST: gi|211518498|gb|FL164992.1|FL164992
EST:     CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAG                         ACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGAGCAACTACGGGA
genomic: CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAGgtgcacctcc ... atgtacccagACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
EST: gi|211518503|gb|FL164997.1|FL164997
EST:     CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAG                         ACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGAGCAACTACGGGA
genomic: CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAGgtgcacctcc ... atgtacccagACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
EST: gi|211518501|gb|FL164995.1|FL164995
EST:     CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAG                         ACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGAGCAACTACGGGA
genomic: CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAGgtgcacctcc ... atgtacccagACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
EST: gi|211161473|gb|FL406112.1|FL406112
EST:     CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAG                         ACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
genomic: CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAGgtgcacctcc ... atgtacccagACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
EST: gi|211174948|gb|FL423157.1|FL423157
EST:     CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAG                         ACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
genomic: CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAGgtgcacctcc ... atgtacccagACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
EST: gi|211059929|gb|FL385110.1|FL385110
EST:     CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAG                         ACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
genomic: CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAGgtgcacctcc ... atgtacccagACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
EST: gi|211147234|gb|FL386496.1|FL386496
EST:     CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAG                         ACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
genomic: CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAGgtgcacctcc ... atgtacccagACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
EST: gi|211438792|gb|FL370296.1|FL370296
EST:     CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAG                         ACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
genomic: CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAGgtgcacctcc ... atgtacccagACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
EST: gi|211330326|gb|FL407974.1|FL407974
EST:     CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAG                         ACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGAGCAACTACGGGA
genomic: CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAGgtgcacctcc ... atgtacccagACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
EST: gi|211138392|gb|FL369556.1|FL369556
EST:     CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAG                         ACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
genomic: CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAGgtgcacctcc ... atgtacccagACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
EST: gi|211360888|gb|FL401848.1|FL401848
EST:     CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAG                         ACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
genomic: CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAGgtgcacctcc ... atgtacccagACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
EST: gi|211092843|gb|FL409107.1|FL409107
EST:     CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAG                         ACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
genomic: CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAGgtgcacctcc ... atgtacccagACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
EST: gi|213177951|gb|FM186693.1|FM186693
EST:     CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAG                         ACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
genomic: CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAGgtgcacctcc ... atgtacccagACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
EST: gi|211197151|gb|FL410126.1|FL410126
EST:     CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAG                         ACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
genomic: CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAGgtgcacctcc ... atgtacccagACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
EST: gi|211059649|gb|FL374521.1|FL374521
EST:     CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAG                         ACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
genomic: CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAGgtgcacctcc ... atgtacccagACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
EST: gi|211520928|gb|FL381015.1|FL381015
EST:     CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAG                         ACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
genomic: CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAGgtgcacctcc ... atgtacccagACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
EST: gi|211401145|gb|FL424155.1|FL424155
EST:     CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCTGAGTCGTCCTGCCCGCGAG                         ACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
genomic: CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAGgtgcacctcc ... atgtacccagACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
EST: gi|9952569|gb|BE639257.1|BE639257
EST:     CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAG                         ACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
genomic: CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAGgtgcacctcc ... atgtacccagACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
EST: gi|211276874|gb|FL384341.1|FL384341
EST:     CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAG                         ACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
genomic: CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAGgtgcacctcc ... atgtacccagACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
EST: gi|211376853|gb|FL402403.1|FL402403
EST:     CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAG                         ACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
genomic: CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAGgtgcacctcc ... atgtacccagACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
EST: gi|211516134|gb|FL164978.1|FL164978
EST:     CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAG                         ACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGAGCAACTACGGGA
genomic: CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAGgtgcacctcc ... atgtacccagACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
EST: gi|211204331|gb|FL385646.1|FL385646
EST:     CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAG                         ACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
genomic: CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAGgtgcacctcc ... atgtacccagACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
EST: gi|9731942|gb|BE510694.1|BE510694
EST:     CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAG                         ACAACTCACTGGTGAGAGACATAAGCTGAATGCAGCAGCGCAACTACGGGA
genomic: CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAGgtgcacctcc ... atgtacccagACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
EST: gi|211496467|gb|FL394439.1|FL394439
EST:     CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAG                         ACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
genomic: CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAGgtgcacctcc ... atgtacccagACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
EST: gi|211301346|gb|FL414909.1|FL414909
EST:     CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAG                         ACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
genomic: CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAGgtgcacctcc ... atgtacccagACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
EST: gi|211516141|gb|FL164985.1|FL164985
EST:     CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAG                         ACAACTCACTGTTGAGAGACATAAGCCGAATGCAGCAGAGCAACTACGGGA
genomic: CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAGgtgcacctcc ... atgtacccagACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
EST: gi|211516146|gb|FL164990.1|FL164990
EST:     CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAG                         ACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGAGCAACTACGGGA
genomic: CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAGgtgcacctcc ... atgtacccagACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
EST: gi|211282916|gb|FL424106.1|FL424106
EST:     CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAG                         ACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
genomic: CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAGgtgcacctcc ... atgtacccagACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
EST: gi|211454581|gb|FL410339.1|FL410339
EST:     CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAG                         ACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
genomic: CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAGgtgcacctcc ... atgtacccagACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
EST: gi|211518500|gb|FL164994.1|FL164994
EST:     CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAG                         ACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGAGCAACTACGGGA
genomic: CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAGgtgcacctcc ... atgtacccagACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
EST: gi|211066213|gb|FL412131.1|FL412131
EST:     CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAG                         ACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
genomic: CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAGgtgcacctcc ... atgtacccagACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
EST: gi|211281172|gb|FL428433.1|FL428433
EST:     CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAG                         ACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
genomic: CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAGgtgcacctcc ... atgtacccagACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
EST: gi|211147464|gb|FL403063.1|FL403063
EST:     CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAG                         ACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
genomic: CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAGgtgcacctcc ... atgtacccagACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
EST: gi|211437312|gb|FL424713.1|FL424713
EST:     CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAG                         ACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
genomic: CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAGgtgcacctcc ... atgtacccagACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
EST: gi|211530637|gb|FL413003.1|FL413003
EST:     CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAG                         ACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGAGCAACTACGGGA
genomic: CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAGgtgcacctcc ... atgtacccagACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
EST: gi|211019334|gb|FL371821.1|FL371821
EST:     CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAG                         ACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
genomic: CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAGgtgcacctcc ... atgtacccagACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
EST: gi|211499586|gb|FL402050.1|FL402050
EST:     CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAG                         ACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
genomic: CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAGgtgcacctcc ... atgtacccagACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
EST: gi|211542743|gb|FL414682.1|FL414682
EST:     CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAG                         ACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
genomic: CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAGgtgcacctcc ... atgtacccagACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
EST: gi|211516135|gb|FL164979.1|FL164979
EST:     CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCT-CCCGCGAG                         ACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGAGCAACTACGGGA
genomic: CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAGgtgcacctcc ... atgtacccagACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
EST: gi|211501795|gb|FL387130.1|FL387130
EST:     CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAG                         ACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
genomic: CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAGgtgcacctcc ... atgtacccagACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
EST: gi|211513793|gb|FL164976.1|FL164976
EST:     CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAG                         ACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGAGCAACTACGGGA
genomic: CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAGgtgcacctcc ... atgtacccagACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
EST: gi|211456710|gb|FL410352.1|FL410352
EST:     CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAG                         ACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
genomic: CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAGgtgcacctcc ... atgtacccagACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
EST: gi|211056541|gb|FL371333.1|FL371333
EST:     CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAG                         ACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
genomic: CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAGgtgcacctcc ... atgtacccagACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
EST: gi|211002743|gb|FL375703.1|FL375703
EST:     CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAG                         ACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
genomic: CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAGgtgcacctcc ... atgtacccagACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
EST: gi|211148792|gb|FL393272.1|FL393272
EST:     CGCGGCCGCTGCCWCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAG                         ACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
genomic: CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAGgtgcacctcc ... atgtacccagACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
EST: gi|211278525|gb|FL372003.1|FL372003
EST:     CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAG                         ACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
genomic: CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAGgtgcacctcc ... atgtacccagACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
EST: gi|6031525|gb|AW076427.1|AW076427
EST:     CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAG                         ACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
genomic: CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAGgtgcacctcc ... atgtacccagACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
EST: gi|211028028|gb|FL428640.1|FL428640
EST:     CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAG                         ACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
genomic: CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAGgtgcacctcc ... atgtacccagACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
EST: gi|211434614|gb|FL420707.1|FL420707
EST:     CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAG                         ACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
genomic: CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAGgtgcacctcc ... atgtacccagACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
EST: gi|211292541|gb|FL396122.1|FL396122
EST:     CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAG                         ACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
genomic: CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAGgtgcacctcc ... atgtacccagACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
EST: gi|211392364|gb|FL377417.1|FL377417
EST:     CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGARTCGTCCTGCCCGCGAG                         ACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
genomic: CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAGgtgcacctcc ... atgtacccagACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
EST: gi|211513787|gb|FL164970.1|FL164970
EST:     CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAG                         ACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGAGCAACTACGGGA
genomic: CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAGgtgcacctcc ... atgtacccagACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
EST: gi|211236771|gb|FL420040.1|FL420040
EST:     CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAG                         ACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
genomic: CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAGgtgcacctcc ... atgtacccagACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
EST: gi|211437183|gb|FL418963.1|FL418963
EST:     CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAG                         ACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
genomic: CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAGgtgcacctcc ... atgtacccagACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
EST: gi|211448351|gb|FL416392.1|FL416392
EST:     CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAG                         ACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
genomic: CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAGgtgcacctcc ... atgtacccagACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
EST: gi|211518142|gb|FL378874.1|FL378874
EST:     CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAG                         ACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
genomic: CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAGgtgcacctcc ... atgtacccagACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
EST: gi|211423509|gb|FL387505.1|FL387505
EST:     CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAG                         ACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
genomic: CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAGgtgcacctcc ... atgtacccagACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
EST: gi|21809920|gb|BQ668238.1|BQ668238
EST:     CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAG                         ACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
genomic: CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAGgtgcacctcc ... atgtacccagACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
EST: gi|211157918|gb|FL378568.1|FL378568
EST:     CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAG                         ACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
genomic: CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAGgtgcacctcc ... atgtacccagACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
EST: gi|211147267|gb|FL387789.1|FL387789
EST:     CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAG                         ACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
genomic: CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAGgtgcacctcc ... atgtacccagACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
EST: gi|211384390|gb|FL373861.1|FL373861
EST:     CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAG                         ACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
genomic: CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAGgtgcacctcc ... atgtacccagACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
EST: gi|211254730|gb|FL417850.1|FL417850
EST:     CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAG                         ACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
genomic: CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAGgtgcacctcc ... atgtacccagACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
EST: gi|211095055|gb|FL396375.1|FL396375
EST:     CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAG                         ACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
genomic: CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAGgtgcacctcc ... atgtacccagACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
EST: gi|211516133|gb|FL164977.1|FL164977
EST:     CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAG                         ACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGAGCAACTACGGGA
genomic: CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAGgtgcacctcc ... atgtacccagACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
EST: gi|211217181|gb|FL385711.1|FL385711
EST:     CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAG                         ACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
genomic: CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAGgtgcacctcc ... atgtacccagACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
EST: gi|211106738|gb|FL429079.1|FL429079
EST:     CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAG                         ACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGAGCAACTACGGGA
genomic: CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAGgtgcacctcc ... atgtacccagACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
EST: gi|211516145|gb|FL164989.1|FL164989
EST:     CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAG                         ACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGAGCAACTACGGGA
genomic: CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAGgtgcacctcc ... atgtacccagACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
EST: gi|211215176|gb|FL411859.1|FL411859
EST:     CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAG                         ACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA
genomic: CGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAGgtgcacctcc ... atgtacccagACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 42 (upstream exon), 49 (downstream exon)
Score: 131

AGACCCCACCTCGCCGCCGTCGGTCGCGGGCTGCTCCTCGCGTCCGTCCTCGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAGgtgcacctcc ... atgtacccagACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGAGGGAAGGATTCTCGCATATAACTGTCACAGGTGCTCTTGCTCACGGGAC


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 115

AGACCCCACCTCGCCGCCGTCGGTCGCGGGCTGCTCCTCGCGTCCGTCCTCGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAGgtgcacctcc ... atgtacccagACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGAGGGAAGGATTCTCGCATATAACTGTCACAGGTGCTCTTGCTCACGGGAC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 145

AGACCCCACCTCGCCGCCGTCGGTCGCGGGCTGCTCCTCGCGTCCGTCCTCGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAGgtgcacctcc ... atgtacccagACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGAGGGAAGGATTCTCGCATATAACTGTCACAGGTGCTCTTGCTCACGGGAC


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 99

AGACCCCACCTCGCCGCCGTCGGTCGCGGGCTGCTCCTCGCGTCCGTCCTCGCGGCCGCTGCCTCCTCCCTCCCAGTAGCCGAGTCGTCCTGCCCGCGAGgtgcacctcc ... atgtacccagACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGAGGGAAGGATTCTCGCATATAACTGTCACAGGTGCTCTTGCTCACGGGAC




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatacagttatagaaaatcttttctagtgcactgatgatattctgatgtacccagACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGAGGGAAGGATTCTCGCATATAACTGTCACAGGTGCTCTTGCTCACGGGAC
                                        ttctgat  putative branch site (score: 99)
       ttatagaaaatctttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gacagtttcttgcgacttcgcgacagaagtgagcatctttcttttgatacagttatagaaaatcttttctagtgcactgatgatattctgatgtacccagACAACTCACTGGTGAGAGACATAAGCCGAATGCAGCAGCGCAACTACGGGAGGGAAGGATTCTCGCATATAACTGTCACAGGTGCTCTTGCTCACGGGAC

- - - ttcttgc
- - - - - - - - - - - - - - - gagcatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - atagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgatgat