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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgtgctgttcggccaccgctgaataagactcgggccattgtctattggacgcattgatgcattcgtttcgattgattcgatgtgtgggttgttttttttctgcagGTGTGGATTACGAGTACAAGGCGGTGAACCTTCTCAAGGGCGAGCAGTCTGATCCAGGTGGGTTCGTACTACACCATACCATTACTTGTACTACCTACCT

Basic information

species Zea mays
transcript GRMZM2G064255_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G064255_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os02g35590.3 (Oryza sativa), 3'ss of exon 1
--------------------gtgcgtgctgttcggccaccgctgaataagactcgggccattgtctattggacgcattgatgcattcgtttcgattgattcg-atgtgtgggt--------tgttttttttctgcagGTGTGGATTACGAGTACAAGGCGGTGAACCTTCTCAAGGGCGAGCAGTCTGATCCAGGTGGGTTCGTACTACACCATACCATTACTTGTACTACCTACCT
                    | |  |||  | |   |  ||     |   |  || |   ||| ||  ||| ||    ||   | |      | |   | ||   ||| ||||        ||| | | | |||||||  |||| ||||||||||||||||||||||| |||||||| ||||| ||||||||||                                           
gtacgttgtgcccgcgccgcgcgattgccttcctctcgtcgtcatcttctatgcgtg--gttggctcatggccgggcagagtgagtgaacctggtgcgtgcgtgcgtgcgggtgattttgatgtctgtctcctgcagGATTGGAGTACGAGTACAAGGCGGTGAACCTGCTCAAGGGGGAGCACTCTGATCCAG-------------------------------------------


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcattgatgcattcgtttcgattgattcgatgtgtgggttgttttttttctgcagGTGTGGATTACGAGTACAAGGCGGTGAACCTTCTCAAGGGCGAGCAGTCTGATCCAGGTGGGTTCGTACTACACCATACCATTACTTGTACTACCTACCT
                   gattgat  putative branch site (score: 4)
                                      ttgttttttttctgc  putative PPT
                                      ttgtttttttt  TA-rich tract