Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|33097704|gb|CF057664.1|CF057664EST: GAAAGCCCCC-ACGGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAA CCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
genomic: GAAAGCCCCCAAC-GGCAGCAGCAAAAGCAGCAAACCTAACTCTAAAgtaagtaaat ... tctcttgcagCCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
EST:
gi|20336905|gb|BQ172535.1|BQ172535EST: GGCAGCAGCAAAAGCAGCAAGCCTAACTCTAAT CCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
genomic: GGCAGCAGCAAAAGCAGCAAACCTAACTCTAAAgtaagtaaat ... tctcttgcagCCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
EST:
gi|76019815|gb|DT946985.1|DT946985EST: AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAA CCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
genomic: AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAAgtaagtaaat ... tctcttgcagCCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
EST:
gi|7162296|gb|AW519903.1|AW519903EST: CCTAACTCTAAA CCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
genomic: CCTAACTCTAAAgtaagtaaat ... tctcttgcagCCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
EST:
gi|5499240|gb|AI855107.1|AI855107EST: AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAGCCTAACTTTAAA CCTTCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGNNNNNNNA
genomic: AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAAgtaagtaaat ... tctcttgcagCCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
EST:
gi|211429758|gb|FL434114.1|FL434114EST: AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAGCCTAACTCTAAA CCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
genomic: AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAAgtaagtaaat ... tctcttgcagCCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
EST:
gi|166587321|gb|EG226747.1|EG226747EST: AAGCAGCAAACCTAACTCTAAA CCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCTACCCA
genomic: AAGCAGCAAACCTAACTCTAAAgtaagtaaat ... tctcttgcagCCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
EST:
gi|21809487|gb|BQ667805.1|BQ667805EST: AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAGCCTAACTCTAAG CCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
genomic: AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAAgtaagtaaat ... tctcttgcagCCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
EST:
gi|30087499|gb|CB885705.1|CB885705EST: AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAA CCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
genomic: AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAAgtaagtaaat ... tctcttgcagCCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
EST:
gi|18170234|gb|BM340074.1|BM340074EST: AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAA CCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
genomic: AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAAgtaagtaaat ... tctcttgcagCCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
EST:
gi|9731694|gb|BE510446.1|BE510446EST: AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAGCCTAACTCTAAA CCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
genomic: AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAAgtaagtaaat ... tctcttgcagCCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
EST:
gi|60337523|gb|DN204496.1|DN204496EST: AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAA CCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
genomic: AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAAgtaagtaaat ... tctcttgcagCCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
EST:
gi|76012948|gb|DT940118.1|DT940118EST: AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAA CCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
genomic: AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAAgtaagtaaat ... tctcttgcagCCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
EST:
gi|148956926|gb|EC902856.2|EC902856EST: AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAA CCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
genomic: AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAAgtaagtaaat ... tctcttgcagCCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
EST:
gi|33096684|gb|CF056678.1|CF056678EST: GAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAA CCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
genomic: GAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAAgtaagtaaat ... tctcttgcagCCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
EST:
gi|60356014|gb|DN222987.1|DN222987EST: AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAA CCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
genomic: AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAAgtaagtaaat ... tctcttgcagCCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
EST:
gi|91867781|gb|EB399793.1|EB399793EST: CCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTTTAAA CCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
genomic: CCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAAgtaagtaaat ... tctcttgcagCCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
EST:
gi|113703074|gb|EE680578.1|EE680578EST: AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAA CCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
genomic: AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAAgtaagtaaat ... tctcttgcagCCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
EST:
gi|76927465|gb|DV171256.1|DV171256EST: AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTTTAAA CCATCAAAACTGACCAATTTTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
genomic: AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAAgtaagtaaat ... tctcttgcagCCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
EST:
gi|76011298|gb|DT938468.1|DT938468EST: AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAA CCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGNNNNNNNA
genomic: AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAAgtaagtaaat ... tctcttgcagCCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
EST:
gi|31406207|gb|CD484939.1|CD484939EST: AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAA CCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
genomic: AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAAgtaagtaaat ... tctcttgcagCCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
EST:
gi|37381883|gb|CF627847.1|CF627847EST: ATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTTCTAAA CCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCC
genomic: ATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAAC-TCTAAAgtaagtaaat ... tctcttgcagCCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCC
EST:
gi|166643460|gb|EG187531.1|EG187531EST: ATCGAAAGCCCCCAACGGCAGACAGCAAAAGCAGCAAACCTAACTCTAAA CCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
genomic: ATCGAAAGCCCCCAACGGCAG-CAGCAAAAGCAGCAAACCTAACTCTAAAgtaagtaaat ... tctcttgcagCCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
EST:
gi|18169164|gb|BM339004.1|BM339004EST: AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAA CCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
genomic: AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAAgtaagtaaat ... tctcttgcagCCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
EST:
gi|78544955|gb|DV622453.1|DV622453EST: AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAGCCTAACTCTAAA CCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
genomic: AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAAgtaagtaaat ... tctcttgcagCCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
EST:
gi|87157088|gb|DY401877.1|DY401877EST: AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAGCCTAACTCTAAA CCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
genomic: AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAAgtaagtaaat ... tctcttgcagCCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
EST:
gi|4967116|gb|AI691845.1|AI691845EST: -ATCGAAAG-CCCCAACGGCAGCAGCAAAAGCAGCAAGCCTAACTCTAAA CCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
genomic: AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAAgtaagtaaat ... tctcttgcagCCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
EST:
gi|211529284|gb|FL466450.1|FL466450EST: AAGCAGCAAACCTAACTCTAAA CCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
genomic: AAGCAGCAAACCTAACTCTAAAgtaagtaaat ... tctcttgcagCCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
EST:
gi|76012947|gb|DT940117.1|DT940117EST: AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTTTAAA CCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
genomic: AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAAgtaagtaaat ... tctcttgcagCCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
EST:
gi|31406287|gb|CD485019.1|CD485019EST: AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAA CCATCAAAGCTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
genomic: AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAAgtaagtaaat ... tctcttgcagCCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
RNA-Seq data
ATGC Supported by RNA-Seq exonic block that spans over the splice site
atgs Truncated intron sequence
Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.
Found data for 4 RNA-Seq libraries.
Block sizes:
49 (upstream exon),
47 (downstream exon)
Score:
820TAACAACCTGCCCACTGTTTATGAAGTTGTGACGGGGGTTGCTAAGAAGCAATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAAgtaagtaaat ... tctcttgcagCCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCAAAAGAAGAGGAGGACAGCGGCCGGGAGGACGCAGAGGAGGACCAGGCGT
Block sizes:
49 (upstream exon),
47 (downstream exon)
Score:
204TAACAACCTGCCCACTGTTTATGAAGTTGTGACGGGGGTTGCTAAGAAGCAATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAAgtaagtaaat ... tctcttgcagCCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCAAAAGAAGAGGAGGACAGCGGCCGGGAGGACGCAGAGGAGGACCAGGCGT
Block sizes:
49 (upstream exon),
47 (downstream exon)
Score:
307TAACAACCTGCCCACTGTTTATGAAGTTGTGACGGGGGTTGCTAAGAAGCAATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAAgtaagtaaat ... tctcttgcagCCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCAAAAGAAGAGGAGGACAGCGGCCGGGAGGACGCAGAGGAGGACCAGGCGT
Block sizes:
49 (upstream exon),
46 (downstream exon)
Score:
217TAACAACCTGCCCACTGTTTATGAAGTTGTGACGGGGGTTGCTAAGAAGCAATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAAgtaagtaaat ... tctcttgcagCCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCAAAAGAAGAGGAGGACAGCGGCCGGGAGGACGCAGAGGAGGACCAGGCGT