Skip to another splice site:
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 5'  3'   		2  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagctagcctcacgcatttccagcctcctcctctctgtccttttggtttgtcgatgcttcctgacgctgtagttgcttcggtggtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG

Basic information

species Zea mays
transcript GRMZM2G063864_T01
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211089671|gb|FL143709.1|FL143709
EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|5567021|gb|AI881932.1|AI881932
EST:     CCGGGGGTGCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|211541755|gb|FL143681.1|FL143681
EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|28909913|gb|CB331162.1|CB331162
EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|148956927|gb|EC902857.2|EC902857
EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|31360935|gb|CD445292.1|CD445292
EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|211541758|gb|FL143684.1|FL143684
EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|148973532|gb|EE024632.2|EE024632
EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|67015174|gb|CO443923.1|CO443923
EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|31441001|gb|CD510432.1|CD510432
EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|211273111|gb|FL373250.1|FL373250
EST:     CCGCGATTTCCGCGCGCG-CGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|91056115|gb|EB166533.1|EB166533
EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|211538738|gb|FL143667.1|FL143667
EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|30705614|gb|CD058845.1|CD058845
EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|148943443|gb|EC888502.2|EC888502
EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|211087221|gb|FL143694.1|FL143694
EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|22472296|gb|BU036776.1|BU036776
EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|21432175|gb|BQ547665.1|BQ547665
EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|28909531|gb|CB330977.1|CB330977
EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|74233488|gb|DT641402.1|DT641402
EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|37421141|gb|CF648268.1|CF648268
EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|211087222|gb|FL143695.1|FL143695
EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|211405597|gb|FL390184.1|FL390184
EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGT-GAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|148942470|gb|EC887488.2|EC887488
EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|211488746|gb|FL429925.1|FL429925
EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|211087220|gb|FL143693.1|FL143693
EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|26558205|gb|CA830440.1|CA830440
EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|31441082|gb|CD510513.1|CD510513
EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|149081993|gb|EE171161.2|EE171161
EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|26558541|gb|CA830776.1|CA830776
EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|211089669|gb|FL143707.1|FL143707
EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|40335649|gb|CK369719.1|CK369719
EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCNAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|211089673|gb|FL143711.1|FL143711
EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|22472098|gb|BU036578.1|BU036578
EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|22133724|gb|BQ833869.1|BQ833869
EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|87156313|gb|DY401102.1|DY401102
EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|60343509|gb|DN210482.1|DN210482
EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|67022293|gb|CO451042.1|CO451042
EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|93013611|gb|EB639131.1|EB639131
EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|20802891|gb|BQ293926.1|BQ293926
EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCG-CAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|211089667|gb|FL143705.1|FL143705
EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|211538741|gb|FL143670.1|FL143670
EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|211089668|gb|FL143706.1|FL143706
EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|211089672|gb|FL143710.1|FL143710
EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|148963054|gb|EE014007.2|EE014007
EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|211087218|gb|FL143691.1|FL143691
EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGT-GAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|211538739|gb|FL143668.1|FL143668
EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|71757175|gb|DR955112.1|DR955112
EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|148966200|gb|EE017149.2|EE017149
EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|76019816|gb|DT946986.1|DT946986
EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|50337566|gb|CO532692.1|CO532692
EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|211087228|gb|FL143701.1|FL143701
EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|23357493|gb|BU645142.1|BU645142
EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|211538744|gb|FL143673.1|FL143673
EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|211087231|gb|FL143704.1|FL143704
EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|91874786|gb|EB404743.1|EB404743
EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|211538740|gb|FL143669.1|FL143669
EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|211541757|gb|FL143683.1|FL143683
EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|211448345|gb|FL416386.1|FL416386
EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|213174383|gb|FM184210.1|FM184210
EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|211541760|gb|FL143686.1|FL143686
EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|101395826|gb|EB819840.1|EB819840
EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|211538737|gb|FL143666.1|FL143666
EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|91867783|gb|EB399794.1|EB399794
EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|211087225|gb|FL143698.1|FL143698
EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|211538743|gb|FL143672.1|FL143672
EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|211541762|gb|FL143688.1|FL143688
EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|211089679|gb|FL143717.1|FL143717
EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|21809488|gb|BQ667806.1|BQ667806
EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|211087229|gb|FL143702.1|FL143702
EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|30087500|gb|CB885706.1|CB885706
EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|26456376|gb|CA827959.1|CA827959
EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
EST: gi|211089676|gb|FL143714.1|FL143714
EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 47 (downstream exon)
Score: 1188

GGAGGCGCTGGTGCGCTGCACCACCACACGCGCTCACCCGAGGACGTCTTCCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG


Block sizes: 45 (upstream exon), 47 (downstream exon)
Score: 314

GGAGGCGCTGGTGCGCTGCACCACCACACGCGCTCACCCGAGGACGTCTTCCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG


Block sizes: 49 (upstream exon), 45 (downstream exon)
Score: 268

GGAGGCGCTGGTGCGCTGCACCACCACACGCGCTCACCCGAGGACGTCTTCCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG


Block sizes: 49 (upstream exon), 44 (downstream exon)
Score: 230

GGAGGCGCTGGTGCGCTGCACCACCACACGCGCTCACCCGAGGACGTCTTCCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccttttggtttgtcgatgcttcctgacgctgtagttgcttcggtggtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
                    tcctgac  putative branch site (score: 230)
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtcagctagcctcacgcatttccagcctcctcctctctgtccttttggtttgtcgatgcttcctgacgctgtagttgcttcggtggtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGT