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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtttgcttcccctaatttcttctctggggtctcggtcaaattcggctgcggcggtgacctgatgggatcctctatttgtttggttgctgtgtctgtgcagGTGCGGTGGTAGCCGAGCGCTCCGGCCATGGCGTTCTATCGGGGCCTCACCGCAGTCTCGAGACTGCGATCACGCATG

Basic information

species Zea mays
transcript GRMZM2G063851_T02
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211505526|gb|FL228165.1|FL228165
EST:     GGAACACGCGCGCCGTCGTCGCCAGCCCGGGTTCATTTCTCCGTTCCTTG                         GTGCGGTGGTAGCCGAGCGCTCCGGCCATGGCGTTCTATCGGGGCCTCACC
genomic: GGAACACGCGCGCCGTCGTCGCCAGCCCGGGTTCATTTCTCCGTTCCTTGgtaagcaagt ... gtctgtgcagGTGCGGTGGTAGCCGAGCGCTCCGGCCATGGCGTTCTATCGGGGCCTCACC
EST: gi|211507876|gb|FL228171.1|FL228171
EST:     GGAACACGCGCGCCGTCGTCGCCAGCCCGGGTTCATTTCTCCGTTCCTTG                         GTGCGGTGGTAGCCGAGCGCTCCGGCCATGGCGTTCTATCGGGGCCTCACC
genomic: GGAACACGCGCGCCGTCGTCGCCAGCCCGGGTTCATTTCTCCGTTCCTTGgtaagcaagt ... gtctgtgcagGTGCGGTGGTAGCCGAGCGCTCCGGCCATGGCGTTCTATCGGGGCCTCACC
EST: gi|211507874|gb|FL228169.1|FL228169
EST:     GGAACACGCGCGCCGTCGTCGCCAGCCCGGGTTCATTTCTCCGTTCCTTG                         GTGCGGTGGTAGCCGAGCGCTCCGGCCATGGCGTTCTATCGGGGCCTCACC
genomic: GGAACACGCGCGCCGTCGTCGCCAGCCCGGGTTCATTTCTCCGTTCCTTGgtaagcaagt ... gtctgtgcagGTGCGGTGGTAGCCGAGCGCTCCGGCCATGGCGTTCTATCGGGGCCTCACC
EST: gi|211059244|gb|FL131321.1|FL131321
EST:     AACACGCGCGCCGTCGTCGCCAGCCCGGGTTCATTTCTCCGTTCCTTG                         GTGCGGTGGTAGCCGAGCGCTCCGGCCATGGCGTTCTATCGGGGCCTCACC
genomic: AACACGCGCGCCGTCGTCGCCAGCCCGGGTTCATTTCTCCGTTCCTTGgtaagcaagt ... gtctgtgcagGTGCGGTGGTAGCCGAGCGCTCCGGCCATGGCGTTCTATCGGGGCCTCACC
EST: gi|148932412|gb|EC876097.2|EC876097
EST:     GGAACACGCGCGCCGTCGTCGCCAGCCCGGGTTCATTTCTCCGTTCCTTG                         GTGCGGTGGTAGCCGAGCGCTCCGGCCATGGCGTTCTATCGGGGCCTCACC
genomic: GGAACACGCGCGCCGTCGTCGCCAGCCCGGGTTCATTTCTCCGTTCCTTGgtaagcaagt ... gtctgtgcagGTGCGGTGGTAGCCGAGCGCTCCGGCCATGGCGTTCTATCGGGGCCTCACC
EST: gi|211507879|gb|FL228174.1|FL228174
EST:     GGAACACGCGCGCCGTCGTCGCCAGCCCGGGTTCATTTCTCCGTTCCTTG                         GTGCGGTGGTAGCCGAGCGCTCCGGCCATGGCGTTCTATCGGGGCCTCACC
genomic: GGAACACGCGCGCCGTCGTCGCCAGCCCGGGTTCATTTCTCCGTTCCTTGgtaagcaagt ... gtctgtgcagGTGCGGTGGTAGCCGAGCGCTCCGGCCATGGCGTTCTATCGGGGCCTCACC
EST: gi|93284646|gb|EB676910.1|EB676910
EST:     GGAACACGCGCGCCGTCGTCGCCAGCCCGGGTTCATTTCTCCGTTCCTTG                         GTGCGGTGGTAGCCGAGCGCTCCGGCCATGGCGTTCTATCGGGGCCTCACC
genomic: GGAACACGCGCGCCGTCGTCGCCAGCCCGGGTTCATTTCTCCGTTCCTTGgtaagcaagt ... gtctgtgcagGTGCGGTGGTAGCCGAGCGCTCCGGCCATGGCGTTCTATCGGGGCCTCACC
EST: gi|211510249|gb|FL228196.1|FL228196
EST:     GGAACACGCGCGCCGTCGTCGCCAGCCCGGGTTCATTTCTCCGTTCCTTG                         GTGCGGTGGTAGCCGAGCGCTCCGGCCATGGCGTTCTATCGGGGCCTCACC
genomic: GGAACACGCGCGCCGTCGTCGCCAGCCCGGGTTCATTTCTCCGTTCCTTGgtaagcaagt ... gtctgtgcagGTGCGGTGGTAGCCGAGCGCTCCGGCCATGGCGTTCTATCGGGGCCTCACC
EST: gi|148974563|gb|EE025351.2|EE025351
EST:     GGAACACGCGCGCCGTCGTCGCCAGCCCGGGTTCATTTCTCCGTTCCTTG                         GTGCGGTGGTAGCCGAGCGCTCCGGCCATGGCGTTCTATCGGGGCCTCACC
genomic: GGAACACGCGCGCCGTCGTCGCCAGCCCGGGTTCATTTCTCCGTTCCTTGgtaagcaagt ... gtctgtgcagGTGCGGTGGTAGCCGAGCGCTCCGGCCATGGCGTTCTATCGGGGCCTCACC
EST: gi|211510246|gb|FL228193.1|FL228193
EST:     GGAACACGCGCGCCGTCGTCGCCAGCCCGGGTTCATTTCTCCGTTCCTTG                         GTGCGGTGGTAGCCGAGCGCTCCGGCCATGGCGTTCTATCGGGGCCTCACC
genomic: GGAACACGCGCGCCGTCGTCGCCAGCCCGGGTTCATTTCTCCGTTCCTTGgtaagcaagt ... gtctgtgcagGTGCGGTGGTAGCCGAGCGCTCCGGCCATGGCGTTCTATCGGGGCCTCACC
EST: gi|211507880|gb|FL228175.1|FL228175
EST:     GGAACACGCGCGCCGTCGTCGCCAGCCCGGGTTCATTTCTCCGTTCCTTG                         GTGCGGTGGTAGCCGAGCGCTCCGGCCATGGCGTTCTATCGGGGCCTCACC
genomic: GGAACACGCGCGCCGTCGTCGCCAGCCCGGGTTCATTTCTCCGTTCCTTGgtaagcaagt ... gtctgtgcagGTGCGGTGGTAGCCGAGCGCTCCGGCCATGGCGTTCTATCGGGGCCTCACC
EST: gi|211507878|gb|FL228173.1|FL228173
EST:     GGAACACGCGCGCCGTCGTCGCCAGCCCGGGTTCATTTCTCCGTTCCTTG                         GTGCGGTGGTAGCCGAGCGCTCCGGCCATGGCGTTCTATCGGGGCCTCACC
genomic: GGAACACGCGCGCCGTCGTCGCCAGCCCGGGTTCATTTCTCCGTTCCTTGgtaagcaagt ... gtctgtgcagGTGCGGTGGTAGCCGAGCGCTCCGGCCATGGCGTTCTATCGGGGCCTCACC
EST: gi|211510237|gb|FL228184.1|FL228184
EST:     GGAACACGCGCGCCGTCGTCGCCAGCCCGGGTTCATTTCTCCGTTCCTTG                         GTGCGGTGGTAGCCGAGCGCTCCGGCCATGGCGTTCTATCGGGGCCTCACC
genomic: GGAACACGCGCGCCGTCGTCGCCAGCCCGGGTTCATTTCTCCGTTCCTTGgtaagcaagt ... gtctgtgcagGTGCGGTGGTAGCCGAGCGCTCCGGCCATGGCGTTCTATCGGGGCCTCACC
EST: gi|211507873|gb|FL228168.1|FL228168
EST:     GGAACACGCGCGCCGTCGTCGCCAGCCCGGGTTCATTTCTCCGTTCCTTG                         GTGCGGTGGTAGCCGAGCGCTCCGGCCATGGCGTTCTATCGGGGCCTCACC
genomic: GGAACACGCGCGCCGTCGTCGCCAGCCCGGGTTCATTTCTCCGTTCCTTGgtaagcaagt ... gtctgtgcagGTGCGGTGGTAGCCGAGCGCTCCGGCCATGGCGTTCTATCGGGGCCTCACC
EST: gi|211507884|gb|FL228179.1|FL228179
EST:     GGAACACGCGCGCCGTCGTCGCCAGCCCGGGTTCATTTCTCCGTTCCTTG                         GTGCGGTGGTAGCCGAGCGCTCCGGCCATGGCGTTCTATCGGGGCCTCACC
genomic: GGAACACGCGCGCCGTCGTCGCCAGCCCGGGTTCATTTCTCCGTTCCTTGgtaagcaagt ... gtctgtgcagGTGCGGTGGTAGCCGAGCGCTCCGGCCATGGCGTTCTATCGGGGCCTCACC
EST: gi|211507875|gb|FL228170.1|FL228170
EST:     GGAACACGCGCGCCGTCGTCGCCAGCCCGGGTTCATTTCTCCGTTCCTTG                         GTGCGGTGGTAGCCGAGCGCTCCGGCCATGGCGTTCTATCGGGGCCTCACC
genomic: GGAACACGCGCGCCGTCGTCGCCAGCCCGGGTTCATTTCTCCGTTCCTTGgtaagcaagt ... gtctgtgcagGTGCGGTGGTAGCCGAGCGCTCCGGCCATGGCGTTCTATCGGGGCCTCACC
EST: gi|211505527|gb|FL228166.1|FL228166
EST:     GGAACACGCGCGCCGTCGTCGCCAGCCCGGGTTCATTTCTCCGTTCCTTG                         GTGCGGTGGTAGCCGAGCGCTCCGGCCATGGCGTTCTATCGGGGCCTCACC
genomic: GGAACACGCGCGCCGTCGTCGCCAGCCCGGGTTCATTTCTCCGTTCCTTGgtaagcaagt ... gtctgtgcagGTGCGGTGGTAGCCGAGCGCTCCGGCCATGGCGTTCTATCGGGGCCTCACC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgcggcggtgacctgatgggatcctctatttgtttggttgctgtgtctgtgcagGTGCGGTGGTAGCCGAGCGCTCCGGCCATGGCGTTCTATCGGGGCCTCACCGCAGTCTCGAGACTGCGATCACGCATG
           acctgat  putative branch site (score: 4)
                           tatttgttt  TA-rich tract