1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tggccgaggaggacacggttgacggtttcacggttatatgccaataattattgtgatgcggctagcggacctaactgctagatctggctgctgtttgcagGGATTGATTGTGATCAGATCTATTCTGTAGTGGTCAGCGGCTGAGGGTGAACCGAAGATGAGCGTTGTGGGATTCGATCTCGGCAATGAGAGCTGCATTG
species | Zea mays |
transcript | GRMZM2G063676_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGTCTGCCAACGGCCCCGGCGCCGGCACGGCCTNCCCCGCGCCGCCACAG GGATTGATTGTGATCAGATCTATTCTGTAGTGGTCAGCGGCTGAGGGTGAAEST: gi|148939723|gb|EC884405.2|EC884405
genomic: AGTCT-CCAACGGCCCCGGCGCCGGCACGGCCTGCCCCGCGCCGCCACAGgtaccattcg ... ctgtttgcagGGATTGATTGTGATCAGATCTATTCTGTAGTGGTCAGCGGCTGAGGGTGAA
EST: AAGTCTCCAACGGCCCCGGCGCCGGCACGGCCTGCCCCGCGCCGCCACAG GGATTGATTGTGATCAGATCTATTCTGTAGTGGTCAGCGGCTGAGGGTGAAEST: gi|211188067|gb|FK976802.1|FK976802
genomic: AAGTCTCCAACGGCCCCGGCGCCGGCACGGCCTGCCCCGCGCCGCCACAGgtaccattcg ... ctgtttgcagGGATTGATTGTGATCAGATCTATTCTGTAGTGGTCAGCGGCTGAGGGTGAA
EST: AAGTCTCCAACGGCCCCGGCGCCGGCACGGCCTGCCCCGCGCCGCCACAG GGATTGATTGTGATCAGATCTATTCTGTAGTGGTCAGCGGCTGAGGGTGAAEST: gi|87153021|gb|DY397810.1|DY397810
genomic: AAGTCTCCAACGGCCCCGGCGCCGGCACGGCCTGCCCCGCGCCGCCACAGgtaccattcg ... ctgtttgcagGGATTGATTGTGATCAGATCTATTCTGTAGTGGTCAGCGGCTGAGGGTGAA
EST: AAGTCTCCAACGGCCCCGGCGCCGGCACGGCCTGCCCCGCGCCGCCACAG GGATTGATTGTGATCAGATCTATTCTGTAGTGGTCAGCGGCTGAGGGTGAAEST: gi|18648901|gb|BM497720.1|BM497720
genomic: AAGTCTCCAACGGCCCCGGCGCCGGCACGGCCTGCCCCGCGCCGCCACAGgtaccattcg ... ctgtttgcagGGATTGATTGTGATCAGATCTATTCTGTAGTGGTCAGCGGCTGAGGGTGAA
EST: AAGTCTCCAACGGCCCCGGCGCCGGCACGGCCTGCCCCGCGCCGCCACAG GGATTGATTGTGATCAGATCTATTCTGTAGTGGTCAGCGGCTGAGGGTGAAEST: gi|149112039|gb|EE191205.2|EE191205
genomic: AAGTCTCCAACGGCCCCGGCGCCGGCACGGCCTGCCCCGCGCCGCCACAGgtaccattcg ... ctgtttgcagGGATTGATTGTGATCAGATCTATTCTGTAGTGGTCAGCGGCTGAGGGTGAA
EST: AAGTCTCCAACGGCCCCGGCGCCGGCACGGCCTGCCCCGCGCCGCCACAG GGATTGATTGTGATCAGATCTATTCTGTAGTGGTCAGCGGCTGAGGGTGAAEST: gi|211188064|gb|FK976799.1|FK976799
genomic: AAGTCTCCAACGGCCCCGGCGCCGGCACGGCCTGCCCCGCGCCGCCACAGgtaccattcg ... ctgtttgcagGGATTGATTGTGATCAGATCTATTCTGTAGTGGTCAGCGGCTGAGGGTGAA
EST: AAGTCTCCAACGGCCCCGGCGCCGGCACGGCCTGCCCCGCGCCGCCACAG GGATTGATTGTGATCAGATCTATTCTGTAGTGGTCAGCGGCTGAGGGTGAAEST: gi|87153994|gb|DY398783.1|DY398783
genomic: AAGTCTCCAACGGCCCCGGCGCCGGCACGGCCTGCCCCGCGCCGCCACAGgtaccattcg ... ctgtttgcagGGATTGATTGTGATCAGATCTATTCTGTAGTGGTCAGCGGCTGAGGGTGAA
EST: AAGTCTCCAACGGCCCCGGCGCCGGCACGGCCTGCCCCGCGCCGCCACAG GGATTGATTGTGATCAGATCTATTCTGTAGTGGTCAGCGGCTGAGGGTGAAEST: gi|149078905|gb|EE167723.2|EE167723
genomic: AAGTCTCCAACGGCCCCGGCGCCGGCACGGCCTGCCCCGCGCCGCCACAGgtaccattcg ... ctgtttgcagGGATTGATTGTGATCAGATCTATTCTGTAGTGGTCAGCGGCTGAGGGTGAA
EST: AAGTCTCCAACGGCCCCGGCGCCGGCACGGCCTGCCCCGCGCCGCCACAG GGATTGATTGTGATCAGATCTATTCTGTAGTGGTCAGCGGCTGAGGGTGAA
genomic: AAGTCTCCAACGGCCCCGGCGCCGGCACGGCCTGCCCCGCGCCGCCACAGgtaccattcg ... ctgtttgcagGGATTGATTGTGATCAGATCTATTCTGTAGTGGTCAGCGGCTGAGGGTGAA
aattattgtgatgcggctagcggacctaactgctagatctggctgctgtttgcagGGATTGATTGTGATCAGATCTATTCTGTAGTGGTCAGCGGCTGAGGGTGAACCGAAGATGAGCGTTGTGGGATTCGATCTCGGCAATGAGAGCTGCATTG
acctaac putative branch site (score: 105)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tggccgaggaggacacggttgacggtttcacggttatatgccaataattattgtgatgcggctagcggacctaactgctagatctggctgctgtttgcagGGATTGATTGTGATCAGATCTATTCTGTAGTGGTCAGCGGCTGAGGGTGAACCGAAGATGAGCGTTGTGGGATTCGATCTCGGCAATGAGAGCTGCATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC