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...gcaataattgagttccttccttgcatcctgcaaagtgtggccatgctacgtcctgtgctgtgactgtgagcggccatctgacctccatgtctgctaccagGTTGCTTTGCGCTGCGGTGGATCTCCTGGCGTGGCGACATGGGCCTGGGTTTGGGAGCTCTTCTCAAATCCGGCGGGCTCTCGGTCTCGGATCACGACGC
species | Zea mays |
transcript | GRMZM2G063492_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCCCCGGACGCAGCCGGCGCCTTCTGACTTGGGTTGGCACAGCCGTACAG GTTGCTTTGCGCTGCGGTGGATCTCCTGGCGTGGCGACATGGGCCTGGGTTEST: gi|211214877|gb|FK947155.1|FK947155
genomic: TCCCCGGACGCAGCCGGCGCCTTCTGACTTGGGTTGGCACAGCCGTACAGgttcatttct ... ctgctaccagGTTGCTTTGCGCTGCGGTGGATCTCCTGGCGTGGCGACATGGGCCTGGGTT
EST: TCCCCGGACGCAGCCGGCGCCTTCTGACTTGGGTTGGCACAGCCGTACAG GTTGCTTTGCGCTGCGGTGGATCTCCTGGCGTGGCGACATGGGCCTGGGTTEST: gi|211212315|gb|FK947150.1|FK947150
genomic: TCCCCGGACGCAGCCGGCGCCTTCTGACTTGGGTTGGCACAGCCGTACAGgttcatttct ... ctgctaccagGTTGCTTTGCGCTGCGGTGGATCTCCTGGCGTGGCGACATGGGCCTGGGTT
EST: TCCCCGGACGCAGCCGGCGCCTTCTGACTTGGGTTGGCACAGCCGTACAG GTTGCTTTGCGCTGCGGTGGATCTCCTGGCGTGGCGACATGGGCCTGGGTTEST: gi|211214880|gb|FK947158.1|FK947158
genomic: TCCCCGGACGCAGCCGGCGCCTTCTGACTTGGGTTGGCACAGCCGTACAGgttcatttct ... ctgctaccagGTTGCTTTGCGCTGCGGTGGATCTCCTGGCGTGGCGACATGGGCCTGGGTT
EST: TCCCCGGACGCAGCCGGCGCCTTCTGACTTGGGTTGGCACAG-CGTACAG GTTGCTTTGCGCTGCGGTGGATCTCCTGGCGTGGCGACATGGGCCTGGGTTEST: gi|78078433|gb|DV506847.1|DV506847
genomic: TCCCCGGACGCAGCCGGCGCCTTCTGACTTGGGTTGGCACAGCCGTACAGgttcatttct ... ctgctaccagGTTGCTTTGCGCTGCGGTGGATCTCCTGGCGTGGCGACATGGGCCTGGGTT
EST: TCCCCGGACGCAGCCGGCGCCTTCTGACTTGGGTTGGCACAGCCGTACAG GTTGCTTTGCGCTGCGGTGGATCTCCTGGCGTGGCGACATGGGCCTGGGTTEST: gi|71327380|gb|DR800303.1|DR800303
genomic: TCCCCGGACGCAGCCGGCGCCTTCTGACTTGGGTTGGCACAGCCGTACAGgttcatttct ... ctgctaccagGTTGCTTTGCGCTGCGGTGGATCTCCTGGCGTGGCGACATGGGCCTGGGTT
EST: TCCCCGGACGCAGCCGGCGCCTTCTGACTTGGGTTGGCACAGCCGTACAG GTTGCTTTGCGCTGCGGTGGATCTCCTGGCGTGGCGACATGGGCCTGGGTTEST: gi|211214878|gb|FK947156.1|FK947156
genomic: TCCCCGGACGCAGCCGGCGCCTTCTGACTTGGGTTGGCACAGCCGTACAGgttcatttct ... ctgctaccagGTTGCTTTGCGCTGCGGTGGATCTCCTGGCGTGGCGACATGGGCCTGGGTT
EST: TCCCCGGACGCAGCCGGCGCCTTCTGACTTGGGTTGGCACAGCCGTACAG GTTGCTTTGCGCTGCGGTGGATCTCCTGGCGTGGCGACATGGGCCTGGGTTEST: gi|91872698|gb|EB402655.1|EB402655
genomic: TCCCCGGACGCAGCCGGCGCCTTCTGACTTGGGTTGGCACAGCCGTACAGgttcatttct ... ctgctaccagGTTGCTTTGCGCTGCGGTGGATCTCCTGGCGTGGCGACATGGGCCTGGGTT
EST: TCCCCGGACGCAGCCGGCGCCTTCTGACTTGGGTTGGCACAGCCGTACAG GTTGCTTTGCGCTGCGGTGGATCTCCTGGCGTGGCGACATGGGCCTGGGTTEST: gi|211212317|gb|FK947152.1|FK947152
genomic: TCCCCGGACGCAGCCGGCGCCTTCTGACTTGGGTTGGCACAGCCGTACAGgttcatttct ... ctgctaccagGTTGCTTTGCGCTGCGGTGGATCTCCTGGCGTGGCGACATGGGCCTGGGTT
EST: TCCCCGGACGCAGCCGGCGCCTTCTGACTTGGGTTGGCACAGCCGTACAG GTTGCTTTGCGCTGCGGTGGATCTCCTGGCGTGGCGACATGGGCCTGGGTTEST: gi|76915777|gb|DV166118.1|DV166118
genomic: TCCCCGGACGCAGCCGGCGCCTTCTGACTTGGGTTGGCACAGCCGTACAGgttcatttct ... ctgctaccagGTTGCTTTGCGCTGCGGTGGATCTCCTGGCGTGGCGACATGGGCCTGGGTT
EST: TCCCCGGACGCAGCCGGCGCCTTCTGACTTGGGTTGGCACAGCCGTACAG GTTGCTTTGCGCTGCGGTGGATCTCCTGGCGTGGCGACATGGGCCTGGGTTEST: gi|78118702|gb|DV537086.1|DV537086
genomic: TCCCCGGACGCAGCCGGCGCCTTCTGACTTGGGTTGGCACAGCCGTACAGgttcatttct ... ctgctaccagGTTGCTTTGCGCTGCGGTGGATCTCCTGGCGTGGCGACATGGGCCTGGGTT
EST: TCCCCGGACGCAGCCGGCGCCTTCTGACTTGGGTTGGCACAGCCGTACAG GTTGCTTTGCGCTGCGGTGGATCTCCTGGCGTGGCGACATGGGCCTGGGTTEST: gi|211212316|gb|FK947151.1|FK947151
genomic: TCCCCGGACGCAGCCGGCGCCTTCTGACTTGGGTTGGCACAGCCGTACAGgttcatttct ... ctgctaccagGTTGCTTTGCGCTGCGGTGGATCTCCTGGCGTGGCGACATGGGCCTGGGTT
EST: TCCCCGGACGCAGCCGGCGCCTTCTGACTTGGGTTGGCACAGCCGTACAG GTTGCTTTGCGCTGCGGTGGATCTCCTGGCGTGGCGACATGGGCCTGGGTT
genomic: TCCCCGGACGCAGCCGGCGCCTTCTGACTTGGGTTGGCACAGCCGTACAGgttcatttct ... ctgctaccagGTTGCTTTGCGCTGCGGTGGATCTCCTGGCGTGGCGACATGGGCCTGGGTT
ctacgtcctgtgctgtgactgtgagcggccatctgacctccatgtctgctaccagGTTGCTTTGCGCTGCGGTGGATCTCCTGGCGTGGCGACATGGGCCTGGGTTTGGGAGCTCTTCTCAAATCCGGCGGGCTCTCGGTCTCGGATCACGACGC
atctgac putative branch site (score: 99)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcaataattgagttccttccttgcatcctgcaaagtgtggccatgctacgtcctgtgctgtgactgtgagcggccatctgacctccatgtctgctaccagGTTGCTTTGCGCTGCGGTGGATCTCCTGGCGTGGCGACATGGGCCTGGGTTTGGGAGCTCTTCTCAAATCCGGCGGGCTCTCGGTCTCGGATCACGACGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - -tgcatcc
- - - - - - - - - - - - - - - - - - - -gccatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - gtgctgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcggcca