1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtttgttcttcctcccgtctccctcactaatcgctactgacttttctcttgcctgatccagatctcccttcgcagCCGCCGAGGAACCCCTTCACAGCGCGGAAGATGGC
species | Zea mays |
transcript | GRMZM2G063340_T03 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGCCGCCCGGTGCTCCCTCTCTGCAGGTGGCGGCGCGCTCCCCTCGCCTC CCGCCGAGGAACCCCTTCACAGCGCGGAAGATGGCEST: gi|211026633|gb|FL132092.1|FL132092
genomic: AGCCGCCCGGTGCTCCCTCTCTGCAGGTGGCGGCGCGCTCCCCTCGCCTCgtttgttctt ... cccttcgcagCCGCCGAGGAACCCCTTCACAGCGCGGAAGATGGC
EST: AGCCGCCCGGTGCTCCCTCTCTGCAGGTGGCGGCGCGCTCCCCTCGCCTC CCGCCGAGGAACCCCTTCACAGCGCGGAAGATGGCEST: gi|211026632|gb|FL132091.1|FL132091
genomic: AGCCGCCCGGTGCTCCCTCTCTGCAGGTGGCGGCGCGCTCCCCTCGCCTCgtttgttctt ... cccttcgcagCCGCCGAGGAACCCCTTCACAGCGCGGAAGATGGC
EST: AGCCGCCCGGTGCTCCCTCTCTGCAGGTGGCGGCGCGCTCCCCTCGCCTC CCGCCGAGGAACCCCTTCACAGCGCGGAAGATGGCEST: gi|211029078|gb|FL132094.1|FL132094
genomic: AGCCGCCCGGTGCTCCCTCTCTGCAGGTGGCGGCGCGCTCCCCTCGCCTCgtttgttctt ... cccttcgcagCCGCCGAGGAACCCCTTCACAGCGCGGAAGATGGC
EST: AGCCGCCCGGTGCTCCCTCTCTGCAGGTGGCGGCGCGCTCCCCTCGCCTC CCGCCGAGGAACCCCTTCACAGCGCGGAAGATGGC
genomic: AGCCGCCCGGTGCTCCCTCTCTGCAGGTGGCGGCGCGCTCCCCTCGCCTCgtttgttctt ... cccttcgcagCCGCCGAGGAACCCCTTCACAGCGCGGAAGATGGC
ccctcactaatcgctactgacttttctcttgcctgatccagatctcccttcgcagCCGCCGAGGAACCCCTTCACAGCGCGGAAGATGGC
tctcccttcgc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgttcttcctcccgtctccctcactaatcgctactgacttttctcttgcctgatccagatctcccttcgcagCCGCCGAGGAACCCCTTCACAGCGCGGAAGATGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG