1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtgatcggttctaccgtgtatccgtagttctatacagagatgactttctgttcctggctgtagaggtggaggactcgcattcattgcgcatcgttgttgttattgtttagGTCCCCAGCGACGTGAACACGACTAATGGCGCCAACCTGCTCTTAAACGACCAGAACAAGTACAAGTCGATGCTAGTTCGTACCTACTCCTCACTGTGGA
species | Zea mays |
transcript | GRMZM2G062416_T03 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGAGCCCGACGCACGGTGGCCGGCTCAGGCACCGGAAGCGCTCCAACGAG GTCCCCAGCGACGTGAACACGACTAATGGCGCCAACCTGCTCTTAAACGACEST: gi|78082868|gb|DV511261.1|DV511261
genomic: CGAGCCCGACGCACGGTGGCCGGCTCAGGCACCGGAAGCGCTCCAACGAGgtgatcggtt ... tattgtttagGTCCCCAGCGACGTGAACACGACTAATGGCGCCAACCTGCTCTTAAACGAC
EST: CGAGCCCGACGCACGGTGGCCGGCTCAGGCACCGGAAGCGCTCCAACGAG GTCCCCAGCGACGTGAACACGACTAATGGCGCCAACCTGCTCTTAAACGACEST: gi|71770100|gb|DR968037.1|DR968037
genomic: CGAGCCCGACGCACGGTGGCCGGCTCAGGCACCGGAAGCGCTCCAACGAGgtgatcggtt ... tattgtttagGTCCCCAGCGACGTGAACACGACTAATGGCGCCAACCTGCTCTTAAACGAC
EST: CGAGCCCGACGCACGGTGGCCGGCTCAGGCACCGGAAGCGCTCCAACGAG GTCCCCAGCGACGTGAACACGACTAATGGCGCCAACCTGCTCTTAAACGACEST: gi|32850919|gb|CD990600.1|CD990600
genomic: CGAGCCCGACGCACGGTGGCCGGCTCAGGCACCGGAAGCGCTCCAACGAGgtgatcggtt ... tattgtttagGTCCCCAGCGACGTGAACACGACTAATGGCGCCAACCTGCTCTTAAACGAC
EST: CGAGCCCGACGCACGGTGGCCGGCTCAGGCACCGGAAGCGCTCCAACGAG GTCCCCAGCGACGTGAACACGACTAATGGCGCCAACCTGCTCTTGAACGACEST: gi|211079260|gb|FL047052.1|FL047052
genomic: CGAGCCCGACGCACGGTGGCCGGCTCAGGCACCGGAAGCGCTCCAACGAGgtgatcggtt ... tattgtttagGTCCCCAGCGACGTGAACACGACTAATGGCGCCAACCTGCTCTTAAACGAC
EST: CGAGCCCGACGCACGGTGGCCGGCTCAGGCACCGGAAGCGCTCCAACGAG GTCCCCCAGCGACGTGAACACGACTAATGGCGCCAACCTGCTCTTAAACGAEST: gi|78105509|gb|DV523927.1|DV523927
genomic: CGAGCCCGACGCACGGTGGCCGGCTCAGGCACCGGAAGCGCTCCAACGAGgtgatcggtt ... tattgtttagGTCCCC-AGCGACGTGAACACGACTAATGGCGCCAACCTGCTCTTAAACGA
EST: CGAGCCCGACGCACGGTGGCCGGCTCAGGCACCGGAAGCGCTCCAATGAG GTCCCCAGCGACGTGAACACGACTAATGGCGCCAACCTGCTCTTAAACGACEST: gi|76913973|gb|DV165353.1|DV165353
genomic: CGAGCCCGACGCACGGTGGCCGGCTCAGGCACCGGAAGCGCTCCAACGAGgtgatcggtt ... tattgtttagGTCCCCAGCGACGTGAACACGACTAATGGCGCCAACCTGCTCTTAAACGAC
EST: CGAGCCCGACGCACGGTGGCCGGCTCAGGCACCGGAAGCGCTCCAACGAG GTCCCCAGCGACGTGAACACGACTAATGGCGCCAACCTGCTCTTAAACGACEST: gi|71429077|gb|DR810127.1|DR810127
genomic: CGAGCCCGACGCACGGTGGCCGGCTCAGGCACCGGAAGCGCTCCAACGAGgtgatcggtt ... tattgtttagGTCCCCAGCGACGTGAACACGACTAATGGCGCCAACCTGCTCTTAAACGAC
EST: CGAGCCCGACGCACGGTGGCCGGCTCAGGCACCGGAAGCGCTCCAACGAG GTCCCCAGCGACGTGAACACGACTAATGGCGCCAACCTGCTCTTAAACGACEST: gi|78091669|gb|DV520043.1|DV520043
genomic: CGAGCCCGACGCACGGTGGCCGGCTCAGGCACCGGAAGCGCTCCAACGAGgtgatcggtt ... tattgtttagGTCCCCAGCGACGTGAACACGACTAATGGCGCCAACCTGCTCTTAAACGAC
EST: CGAGCCCGACGCACGGTGGCCGGCTCAGGCACCGGAAGCGCTCCAACGAG GTCCCCAGCGACGTGAACACGACTAATGGCGCCAACCTGCTCTTAAACGACEST: gi|78074249|gb|DV502683.1|DV502683
genomic: CGAGCCCGACGCACGGTGGCCGGCTCAGGCACCGGAAGCGCTCCAACGAGgtgatcggtt ... tattgtttagGTCCCCAGCGACGTGAACACGACTAATGGCGCCAACCTGCTCTTAAACGAC
EST: CGAGCCCGACGCACGGTGGCCGGCTCAGGCACCGGAAGCGCTCCAACGAG GTCCCCAGCGACGTGAACACGACTAATGGCGCCAACCTGCTCTTAAACGAC
genomic: CGAGCCCGACGCACGGTGGCCGGCTCAGGCACCGGAAGCGCTCCAACGAGgtgatcggtt ... tattgtttagGTCCCCAGCGACGTGAACACGACTAATGGCGCCAACCTGCTCTTAAACGAC
ggctgtagaggtggaggactcgcattcattgcgcatcgttgttgttattgtttagGTCCCCAGCGACGTGAACACGACTAATGGCGCCAACCTGCTCTTAAACGACCAGAACAAGTACAAGTCGATGCTAGTTCGTACCTACTCCTCACTGTGGA
ttattgttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgatcggttctaccgtgtatccgtagttctatacagagatgactttctgttcctggctgtagaggtggaggactcgcattcattgcgcatcgttgttgttattgtttagGTCCCCAGCGACGTGAACACGACTAATGGCGCCAACCTGCTCTTAAACGACCAGAACAAGTACAAGTCGATGCTAGTTCGTACCTACTCCTCACTGTGGA
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